{"id":"W2139058138","doi":"10.5539/jas.v6n7p48","title":"Development of Defense Signaling Pathways Against Bacterial Blight Disease in Rice Using Genome-Wide Transcriptome Data","year":2014,"lang":"en","type":"article","venue":"Journal of Agricultural Science","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Rural Development Administration","keywords":"WRKY protein domain; Xanthomonas oryzae; Xanthomonas oryzae pv. oryzae; Biology; Transcriptome; Plant disease resistance; Gene; Genetics; Candidate gene; Transcription factor; Xanthomonas; NPR1; Gene regulatory network; Computational biology; Gene expression; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005036132,0.0004009341,0.0004768478,0.001168403,0.0002676343,0.0006485568,0.0001815069,0.0001598872,0.0006315925],"category_scores_gemma":[0.0003535126,0.0001806479,0.0006483665,0.001057184,0.0001090921,0.000345741,0.0003582131,0.0003424661,0.0003710556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002361732,"about_ca_system_score_gemma":0.0005495921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001214611,"about_ca_topic_score_gemma":0.002653712,"domain_scores_codex":[0.9998229,0.00002354249,0.00001366618,0.00008735566,0.00003039132,0.00002206261],"domain_scores_gemma":[0.9998447,0.00004319225,0.00003513241,0.00001729699,0.00003259576,0.00002710548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003610507,0.00006579248,0.02945926,0.0006312293,0.0002314601,0.0001912708,0.0002490552,0.002016112,0.9261749,0.0003051075,0.0008220366,0.03949283],"study_design_scores_gemma":[0.00007288081,0.000505253,0.8080524,0.0001552538,0.0009429369,0.0006394323,0.0006970614,0.03653383,0.1246995,0.0020498,0.02557025,0.00008144745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9150509,0.004237386,0.03753392,0.0002511349,0.00004036524,0.000111799,0.0387141,0.001266386,0.002794087],"genre_scores_gemma":[0.8442785,0.003692377,0.06424394,0.0001580084,0.00003862506,0.000220688,0.08565518,0.0002218206,0.001490834],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001214611,"threshold_uncertainty_score":0.002663374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05111184695737008,"score_gpt":0.2259083312807477,"score_spread":0.1747964843233776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}