{"id":"W2139138803","doi":"10.1093/nar/gks992","title":"ECMDB: The E. coli Metabolome Database","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research; Genome Alberta; Genome Canada","keywords":"Metabolome; Biology; Database; Metabolomics; Escherichia coli Proteins; Metabolite; Computational biology; Escherichia coli; Biochemistry; Gene; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024616,0.0001510267,0.0001730762,0.0001030146,0.000482269,0.00005349817,0.0005652877,0.000106202,0.0002959048],"category_scores_gemma":[0.0005706191,0.00009977081,0.00009191076,0.0004067802,0.0003754744,0.00001027917,0.000842884,0.0003632687,0.0002704962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002072823,"about_ca_system_score_gemma":0.00006175072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003834509,"about_ca_topic_score_gemma":0.0000120256,"domain_scores_codex":[0.997835,0.0003095837,0.0001775385,0.0003144948,0.0004949516,0.0008684407],"domain_scores_gemma":[0.9986871,0.00006983704,0.0000375095,0.0008370083,0.000187449,0.0001811334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000870036,0.0001613248,0.007473034,0.00001665244,0.0001700982,0.000001965838,0.0001451877,7.179453e-7,0.8832967,0.01266839,0.09330139,0.002677562],"study_design_scores_gemma":[0.0002956057,0.0001177086,0.01434556,0.000003029399,0.00001763149,0.0000097954,0.000427711,0.00001125473,0.09139168,0.0001665272,0.893062,0.0001514874],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9628386,0.01255067,0.000209509,0.00143471,0.0003676778,0.0003593779,0.00006055983,0.00001718133,0.0221617],"genre_scores_gemma":[0.9905082,0.002669379,0.0007916724,0.0003110781,0.001049935,0.00007645402,0.00005430136,0.00003248305,0.004506519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7997606,"threshold_uncertainty_score":0.4068536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06091454847303168,"score_gpt":0.358214818115937,"score_spread":0.2973002696429053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}