{"id":"W2139307727","doi":"10.1242/jcs.101378","title":"Sculpting the endomembrane system in deep time: High resolution phylogenetics of Rab GTPases","year":2012,"lang":"en","type":"article","venue":"Journal of Cell Science","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":170,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Joint Genome Institute; Broad Institute; Wellcome Trust","keywords":"Endomembrane system; Rab; Biology; Endosymbiosis; GTPase; Evolutionary biology; Plastid; Most recent common ancestor; Organelle; Phylogenetics; Cell biology; Genetics; Gene; Cell; Golgi apparatus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007347384,0.0003024822,0.0005515706,0.001990366,0.0008734334,0.001803627,0.0004723674,0.0006931885,0.0007578586],"category_scores_gemma":[0.001515052,0.0003065641,0.0003777803,0.001919792,0.0006533863,0.001400179,0.001373596,0.001204438,0.0008560463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003895249,"about_ca_system_score_gemma":0.0002641981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008203474,"about_ca_topic_score_gemma":0.00146182,"domain_scores_codex":[0.9996464,0.0000942945,0.00001900097,0.0001090784,0.00006786346,0.00006349655],"domain_scores_gemma":[0.9994338,0.0001494397,0.0001226584,0.0001000672,0.00009744977,0.00009643925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007643643,0.000174294,0.1704438,0.0006346909,0.0004612303,0.001517455,0.008018177,0.01044495,0.6336468,0.01928695,0.002014683,0.1525926],"study_design_scores_gemma":[0.0000447773,0.0003703583,0.7639086,0.000372773,0.0005191623,0.004519905,0.005055921,0.07020392,0.02677659,0.026704,0.101304,0.0002200121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9485529,0.008996001,0.0348811,0.000445904,0.00004328959,0.00002383201,0.0006606139,0.0003047728,0.006091601],"genre_scores_gemma":[0.9774355,0.00287703,0.01726869,0.0001695748,0.00003557065,0.00001510938,0.001347103,0.0001209285,0.0007304034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001990366,"threshold_uncertainty_score":0.003885686,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006510020062536942,"score_gpt":0.2072226711557862,"score_spread":0.2007126510932492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}