{"id":"W2139316688","doi":"10.1186/1742-4690-11-17","title":"Direct non-productive HIV-1 infection in a T-cell line is driven by cellular activation state and NFκB","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; University of British Columbia","keywords":"Human immunodeficiency virus (HIV); Cell culture; Antibody; Virology; Medicine; NF-κB; State (computer science); NFKB1; Computational biology; Immunology; Cell biology; Biology; Computer science; Inflammation; Genetics; Transcription factor; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001738761,0.0003268755,0.0002249075,0.0001606041,0.0001786438,0.0005310225,0.0002705124,0.0002582067,0.001723767],"category_scores_gemma":[0.0001429809,0.0001478619,0.0002436049,0.0001775217,0.000250514,0.0002585674,0.000252584,0.0007915112,0.0006301834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003782779,"about_ca_system_score_gemma":0.0002336105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005343723,"about_ca_topic_score_gemma":0.0008520826,"domain_scores_codex":[0.9997901,0.00002412112,0.00002618443,0.00005810018,0.00006527385,0.00003607918],"domain_scores_gemma":[0.9997658,0.00006174811,0.00005808912,0.00005782084,0.0000239659,0.00003256815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003753315,0.00002701383,0.000171842,0.00001382431,0.000001642111,0.00001627443,0.000008354707,0.00002540633,0.9994124,0.00004606005,0.000007956479,0.0002316786],"study_design_scores_gemma":[0.00001115127,0.0002748576,0.003678301,0.000004934761,0.00001056584,0.0002337251,0.0000241836,0.0009048291,0.9942047,0.00004264292,0.0006058444,0.000004290396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929957,0.0007755011,0.00451356,0.00003917821,0.00001811393,0.00003781555,0.0005465873,0.00007098325,0.001002667],"genre_scores_gemma":[0.9937598,0.0004122418,0.002999983,0.0000199101,0.000008207795,0.00006044426,0.0008434833,0.0000207791,0.001875056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001723767,"threshold_uncertainty_score":0.005766571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006102327566856211,"score_gpt":0.2248175382753979,"score_spread":0.2187152107085417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}