{"id":"W2139376216","doi":"10.1093/nar/gkm086","title":"A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"bioluminescence and chemiluminescence research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Hamilton Health Sciences; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Biology; Streptomyces coelicolor; Operon; Photorhabdus luminescens; Housekeeping gene; Bioreporter; Gene cluster; Gene; Bacteria; Gene expression; Luciferase; Promoter; Reporter gene; Genetics; Streptomyces; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003072444,0.0007668531,0.0005944165,0.0004337067,0.000224875,0.0003234035,0.0003966058,0.0003506756,0.001126254],"category_scores_gemma":[0.0004855254,0.00032025,0.0003654999,0.0007758393,0.0002308082,0.0002616242,0.0004096772,0.0008921322,0.0007913577],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006468139,"about_ca_system_score_gemma":0.0005554897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008753968,"about_ca_topic_score_gemma":0.001287899,"domain_scores_codex":[0.999536,0.0000953589,0.00005825227,0.00007108648,0.0001701429,0.00006912512],"domain_scores_gemma":[0.9996777,0.0000640982,0.00008287198,0.00004282752,0.0000660337,0.0000666193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004849782,0.00002454498,0.00005214979,0.00004814987,0.000002016459,0.00001328328,0.000009000295,0.00009265097,0.9988607,0.0001096207,0.00002991907,0.0007094606],"study_design_scores_gemma":[0.00001882086,0.0001955465,0.0004934125,0.000008404951,0.00001296125,0.0001202574,0.00001128986,0.0006196565,0.9953111,0.00005028899,0.003148421,0.000009846334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9177114,0.001103279,0.07513375,0.0002321622,0.0001314099,0.0005531404,0.002445729,0.0007591855,0.001929917],"genre_scores_gemma":[0.7870788,0.001537676,0.1877493,0.0001370312,0.00004063731,0.0009347388,0.01201787,0.0008163906,0.00968761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001126254,"threshold_uncertainty_score":0.004692972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02878820925972241,"score_gpt":0.3398229928131491,"score_spread":0.3110347835534267,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}