{"id":"W2139417287","doi":"10.1093/bioinformatics/btg064","title":"Phylogenetic Web Profiler","year":2003,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Phylogenetic tree; Genome; Annotation; Similarity (geometry); Web server; Biology; Selection (genetic algorithm); Web service; Computer science; Computational biology; World Wide Web; Genetics; Artificial intelligence; The Internet; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001213955,0.0001437035,0.0001099137,0.0000300776,0.00008531537,0.00001452981,0.0001260587,0.00008873325,0.00002688294],"category_scores_gemma":[0.00006116414,0.0001275411,0.00006682565,0.00006778861,0.00005789061,6.237868e-7,0.00005833865,0.00004169763,0.00008188807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006573247,"about_ca_system_score_gemma":0.00008251212,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":8.250061e-7,"about_ca_topic_score_gemma":0.000004010907,"domain_scores_codex":[0.9992886,0.00001952428,0.0002259251,0.0001270874,0.00009455723,0.0002443017],"domain_scores_gemma":[0.9994881,0.000005590954,0.00006867961,0.000310106,0.00005880212,0.00006869167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005112455,0.0002024811,0.07071716,0.0001895005,0.0003918475,0.0000033217,0.0006561389,0.0004052047,0.8790758,0.00991296,0.02822892,0.01016549],"study_design_scores_gemma":[0.0009818861,0.0003763816,0.009611954,0.000009775141,0.00003639724,0.0000475507,0.0004219973,0.0006033629,0.1608969,0.0002995453,0.8261477,0.0005665543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9422233,0.001963228,0.0008149972,0.00003647526,0.000328116,0.0002788524,0.00003064472,0.000008377296,0.054316],"genre_scores_gemma":[0.9826736,0.0003321432,0.01549195,0.0003530249,0.00008318438,0.00002310631,0.00001903269,0.00001701378,0.00100693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7979188,"threshold_uncertainty_score":0.5200974,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179251424524588,"score_gpt":0.2221108952682564,"score_spread":0.2103183810230106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}