{"id":"W2139424556","doi":"10.1002/prot.21901","title":"Role of the amino acid sequence in domain swapping of the B1 domain of protein G","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children","keywords":"Dimer; Monomer; Side chain; Chemistry; Molecular dynamics; Amino acid; Sequence (biology); Stereochemistry; Protein structure; Crystallography; Computational chemistry; Biochemistry; Polymer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000582664,0.0005104275,0.0003766616,0.0003544466,0.000418483,0.0004523351,0.0004071638,0.0005953937,0.0005105311],"category_scores_gemma":[0.001902614,0.0002556976,0.0002513598,0.0002355469,0.0004399809,0.0003446496,0.0002907171,0.0003310687,0.0001606737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003018775,"about_ca_system_score_gemma":0.0005348376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001073372,"about_ca_topic_score_gemma":0.001204473,"domain_scores_codex":[0.9997666,0.000114904,0.0000142429,0.00002867221,0.00003980583,0.00003562676],"domain_scores_gemma":[0.9993691,0.0003436886,0.0001316007,0.00004334154,0.00004487324,0.00006731287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002606208,0.0004562979,0.02346834,0.0002512394,0.0001836729,0.001567328,0.000194699,0.5600272,0.3847299,0.003729496,0.0002077313,0.02257791],"study_design_scores_gemma":[0.0002701361,0.002301573,0.01139026,0.00006465422,0.0002252779,0.0007468534,0.0001736196,0.7653865,0.2166866,0.001758193,0.0009087839,0.00008760999],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970748,0.0001273627,0.00230963,0.00003238849,0.000008045972,0.00001214738,0.00001427423,0.00003709904,0.0003841504],"genre_scores_gemma":[0.9986071,0.00004708648,0.00127576,0.00001079604,0.000001335954,0.00000543552,0.00001033413,0.000008234871,0.00003396808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001073372,"threshold_uncertainty_score":0.003081441,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005447336659594137,"score_gpt":0.1897542321590569,"score_spread":0.1843068954994628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}