{"id":"W2139465010","doi":"10.1093/nar/gkq1151","title":"Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Japan Society for the Promotion of Science; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Ciona intestinalis; Gene; RNA splicing; Trans-splicing; Intron; Genetics; Chordate; Promoter; Exon; Consensus sequence; Ciona; splice; Primary transcript; Transcription (linguistics); Alternative splicing; Genome; RNA; Gene expression; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003837227,0.002038581,0.001235145,0.002633224,0.0009547254,0.0008948057,0.001741295,0.001245602,0.003018016],"category_scores_gemma":[0.004060751,0.001163061,0.001930804,0.001606438,0.00151091,0.0007610088,0.002446902,0.002606364,0.003437199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008189942,"about_ca_system_score_gemma":0.000992008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001119756,"about_ca_topic_score_gemma":0.002358382,"domain_scores_codex":[0.9948903,0.001128944,0.0004157138,0.002232658,0.001004665,0.0003276849],"domain_scores_gemma":[0.9956197,0.001271275,0.000928862,0.001230163,0.0007043759,0.0002456104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001044162,0.0000671666,0.0003395934,0.0002553292,0.00003429713,0.00007062042,0.0001132159,0.000251306,0.9906335,0.0006097829,0.0001188551,0.007401966],"study_design_scores_gemma":[0.0000278024,0.0001469122,0.002011617,0.00002847366,0.00007326872,0.0004164111,0.00004113144,0.002385219,0.9890746,0.0003069844,0.005453966,0.0000336207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.07025622,0.002298793,0.9198663,0.000101391,0.0001658843,0.0006964986,0.001473468,0.002383467,0.002757924],"genre_scores_gemma":[0.1154145,0.001996071,0.8673615,0.000285566,0.00005740295,0.002590763,0.006513216,0.001329415,0.004451603],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003837227,"threshold_uncertainty_score":0.02029341,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07988796306706432,"score_gpt":0.4207458681445324,"score_spread":0.3408579050774681,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}