{"id":"W2139648632","doi":"10.1074/jbc.m111.233973","title":"Saccharomyces cerevisiae Dbf4 Has Unique Fold Necessary for Interaction with Rad53 Kinase","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; McMaster University","funders":"National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research","keywords":"Biology; Origin recognition complex; G2-M DNA damage checkpoint; Saccharomyces cerevisiae; Cell biology; Origin of replication; Genetics; SeqA protein domain; DNA replication; Cell cycle checkpoint; Computational biology; DNA; Cell cycle; Eukaryotic DNA replication; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001109629,0.0005197999,0.0002911132,0.0002548672,0.0002388537,0.0003185564,0.0002967044,0.0002337216,0.001351278],"category_scores_gemma":[0.0001753199,0.0001486832,0.0003755936,0.0001958841,0.0001553228,0.0001620651,0.0002651264,0.0003255174,0.0007060462],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006414329,"about_ca_system_score_gemma":0.0003102832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001687479,"about_ca_topic_score_gemma":0.001430452,"domain_scores_codex":[0.9999355,0.00001092424,0.000006860815,0.00001223924,0.0000180905,0.000016257],"domain_scores_gemma":[0.999902,0.000008380694,0.00002058657,0.00001274651,0.00001336036,0.00004285846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002903378,0.00005023494,0.001877337,0.000107024,0.00002942381,0.0004430872,0.00002494306,0.0002669285,0.9923033,0.000352134,0.0002677951,0.003987587],"study_design_scores_gemma":[0.00006670113,0.0001344349,0.01763232,0.00002307888,0.00006724454,0.001625454,0.00009761151,0.002182448,0.9607421,0.0002949629,0.01711113,0.00002262041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931068,0.00126839,0.003359462,0.0001102134,0.00004705899,0.0000173915,0.000846849,0.0001744022,0.001069555],"genre_scores_gemma":[0.9906459,0.0003890352,0.003451182,0.00003613797,0.00001003841,0.00001681911,0.003269934,0.0000371948,0.002143728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001687479,"threshold_uncertainty_score":0.00465399,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04555219906377073,"score_gpt":0.2619465855663888,"score_spread":0.2163943865026181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}