{"id":"W2139856280","doi":"10.1093/bioinformatics/bts392","title":"Fractionation, rearrangement and subgenome dominance","year":2012,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Fractionation; Polyploid; Biology; Gene duplication; Genome; Computer science; Gene; Genetics; Chemistry; Chromatography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001995747,0.00009037541,0.00006726849,0.00003661728,0.00006691986,0.0000198638,0.00006406844,0.00006117195,0.00003023687],"category_scores_gemma":[0.00002777083,0.00008540658,0.00002405594,0.00005248732,0.00003410085,0.00001662371,0.00006607482,0.00003467863,0.00007079688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001421864,"about_ca_system_score_gemma":0.00001343113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002566011,"about_ca_topic_score_gemma":0.000001486127,"domain_scores_codex":[0.9994396,0.000009336771,0.0001647697,0.00007003064,0.0001142875,0.0002019569],"domain_scores_gemma":[0.9996265,0.000004482187,0.00007262181,0.0001715856,0.00004572669,0.00007907739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002032473,0.0007487729,0.2124415,0.0008086173,0.0006692751,0.000002175033,0.007601685,0.0001087437,0.4218367,0.006007081,0.07891098,0.2706612],"study_design_scores_gemma":[0.0007798968,0.0001341798,0.0842218,0.000009852126,0.00002899892,0.00003298996,0.0004894317,0.0004811159,0.01598421,0.00005607865,0.8974363,0.0003451324],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9645764,0.003177913,0.01681772,0.0002661334,0.0004861393,0.0004323748,0.00002486588,0.00002973834,0.01418876],"genre_scores_gemma":[0.9666914,0.0008249236,0.03030083,0.0002923733,0.0003828552,0.00002787176,0.0001273684,0.00001578031,0.001336641],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8185253,"threshold_uncertainty_score":0.3482779,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01092537070643445,"score_gpt":0.2350080116373403,"score_spread":0.2240826409309058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}