{"id":"W2139999205","doi":"10.3382/ps.2011-01738","title":"Pathogenic and multidrug-resistant Escherichia fergusonii from broiler chicken","year":2012,"lang":"en","type":"article","venue":"Poultry Science","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Agriculture and Agri-Food Canada; McGill University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Virulence; Biology; Plasmid; Integron; Microbiology; Escherichia coli; Multiple drug resistance; Genome; Gene; Pathogenicity island; Pathogenic Escherichia coli; Open reading frame; Salmonella; Antibiotic resistance; Genetics; Salmonella enterica; Whole genome sequencing; Drug resistance; Antibiotics; Bacteria; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003610494,0.0001593798,0.0001235815,0.0000306014,0.0001982672,0.00007254442,0.0003552867,0.00009661604,0.00003741228],"category_scores_gemma":[0.0002151101,0.0001380267,0.0000394345,0.0001720899,0.0004528557,0.00002926406,0.0002120513,0.00008523076,0.0000363347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002305977,"about_ca_system_score_gemma":0.0000959367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006874747,"about_ca_topic_score_gemma":0.00001414563,"domain_scores_codex":[0.9986354,0.0000387914,0.0001690954,0.0004514267,0.0002261828,0.0004791274],"domain_scores_gemma":[0.9991729,0.00001731449,0.00007808984,0.0004424636,0.0000563324,0.0002329275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002568063,0.00002619199,0.2532856,0.000003304026,0.000006140569,6.15108e-7,0.0000680461,4.954969e-7,0.7455912,0.00004973916,0.0001000948,0.0008428833],"study_design_scores_gemma":[0.0002092306,0.00003530528,0.8529391,0.00001275035,0.00001063224,0.000005624375,0.0002186367,0.00002324287,0.1390137,0.00002986206,0.007280013,0.0002218445],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966418,0.001151067,0.0004465114,0.0000727508,0.0003589192,0.00009900244,0.00003546348,0.00001574793,0.001178773],"genre_scores_gemma":[0.9901927,0.0001204591,0.008709547,0.0001904892,0.0002776881,0.000003456982,0.00002436369,0.00001517469,0.0004661017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6065774,"threshold_uncertainty_score":0.5628565,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008906898010863048,"score_gpt":0.2440534799369035,"score_spread":0.2351465819260405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}