{"id":"W2139999205","doi":"10.3382/ps.2011-01738","title":"Pathogenic and multidrug-resistant Escherichia fergusonii from broiler chicken","year":2012,"lang":"en","type":"article","venue":"Poultry Science","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Agriculture and Agri-Food Canada; McGill University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Virulence; Biology; Plasmid; Integron; Microbiology; Escherichia coli; Multiple drug resistance; Genome; Gene; Pathogenicity island; Pathogenic Escherichia coli; Open reading frame; Salmonella; Antibiotic resistance; Genetics; Salmonella enterica; Whole genome sequencing; Drug resistance; Antibiotics; Bacteria; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000682181,0.0003358205,0.0002437922,0.0005095682,0.0001942982,0.0003449173,0.000105679,0.0002231671,0.000312217],"category_scores_gemma":[0.0001641887,0.0001306059,0.0002052001,0.0003406678,0.0001249999,0.00009745243,0.0001951723,0.0002655387,0.0002052469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002389102,"about_ca_system_score_gemma":0.0001951696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00433114,"about_ca_topic_score_gemma":0.004586301,"domain_scores_codex":[0.9998822,0.000006425348,0.00001426439,0.00004118971,0.00002984759,0.00002601645],"domain_scores_gemma":[0.9998797,0.00002197703,0.00002455866,0.00001156134,0.00003044462,0.00003183423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002143067,0.00006508541,0.02147321,0.0001328512,0.00001476412,0.001009077,0.0001913107,0.0000980812,0.9715437,0.00003730163,0.0001147003,0.005105643],"study_design_scores_gemma":[0.00003924603,0.000713923,0.7717211,0.00006014537,0.0001375421,0.008281774,0.001139826,0.001112984,0.2113491,0.00005826288,0.005357582,0.00002859049],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980544,0.0001826578,0.0003372041,0.00003399613,0.000008051827,0.00002613326,0.0008315044,0.000007318363,0.0005187443],"genre_scores_gemma":[0.9901385,0.0003640423,0.002827217,0.00007797118,0.00001052085,0.00002513732,0.005205997,0.00001075262,0.001339827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00433114,"threshold_uncertainty_score":0.008611858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008906898010863048,"score_gpt":0.2440534799369035,"score_spread":0.2351465819260405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}