{"id":"W2140017951","doi":"10.1186/1743-422x-11-188","title":"Complete genome sequence of bacteriophage vB_YenP_AP5 which infects Yersinia enterocoliticaof serotype O:3","year":2014,"lang":"en","type":"article","venue":"Virology Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Guelph; Ontario Ministry of Agriculture, Food and Rural Affairs; Helsingin Yliopisto","keywords":"Biology; Lytic cycle; Bacteriophage; Podoviridae; Yersinia; Genome; Virology; Siphoviridae; Genomic organization; Genetics; Whole genome sequencing; Microbiology; Virus; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002973554,0.0001545108,0.000258559,0.00006700469,0.0001937191,0.00003748803,0.0003143518,0.0001079887,0.007364062],"category_scores_gemma":[0.00005346189,0.0001407358,0.00009120809,0.0001442398,0.0002649428,0.0002816424,0.0001733913,0.0003995407,0.0008189472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001025764,"about_ca_system_score_gemma":0.00001696577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000866958,"about_ca_topic_score_gemma":0.0001222533,"domain_scores_codex":[0.998722,0.0001805323,0.0003722944,0.0002156563,0.0001205366,0.0003890457],"domain_scores_gemma":[0.9992526,0.0000670866,0.0002405476,0.0002283382,0.00003343658,0.000178047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004017672,0.00006604827,0.004954363,0.000005852384,0.00002279771,0.00001017296,0.0001537208,0.00008796619,0.9936876,0.00005424873,0.0002073298,0.000709701],"study_design_scores_gemma":[0.0006626733,0.0007839447,0.8536942,0.00002683081,0.00005251477,0.001674659,0.00002476154,0.0003298085,0.004801722,0.0004237624,0.1372721,0.0002530456],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928378,0.00001056138,0.001124994,0.0004956035,0.000531626,0.000111674,0.00003732933,0.00001661515,0.00483379],"genre_scores_gemma":[0.997816,0.00002636651,0.0008746916,0.0008134908,0.0001253074,0.000004046642,0.00001060565,0.00001566992,0.000313849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9888859,"threshold_uncertainty_score":0.9999591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01326397531336629,"score_gpt":0.2394646120076686,"score_spread":0.2262006366943023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}