{"id":"W2140055902","doi":"10.1016/j.micinf.2007.09.001","title":"Visualization of Mycobacterium avium in Crohn's tissue by oil-immersion microscopy","year":2007,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University Medical Centre; McGill University Health Centre","funders":"","keywords":"Paratuberculosis; Crohn's disease; Mycobacterium; Biology; Staining; Oil immersion; In situ hybridization; Microbiology; Crohn disease; Ziehl–Neelsen stain; Pathology; Mycobacterium avium subspecies paratuberculosis; Bacteria; Disease; Tuberculosis; Medicine; Acid-fast; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003035289,0.0001055213,0.0001944143,0.0002307324,0.00004366929,0.00002051655,0.00002058765,0.0001201643,0.0001773111],"category_scores_gemma":[0.00004575607,0.00009833377,0.0000324477,0.0002720119,0.00005270549,0.0001392953,0.00002951724,0.00009522132,0.00001486569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006649932,"about_ca_system_score_gemma":0.0000222576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001650334,"about_ca_topic_score_gemma":0.0001046021,"domain_scores_codex":[0.9991844,0.00002952625,0.0002622375,0.0001864855,0.0001034098,0.0002339268],"domain_scores_gemma":[0.9996043,0.00003862366,0.00006905712,0.00009990494,0.00008824197,0.00009981633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001971173,0.0001703492,0.2633532,0.0002276324,0.000006389311,0.00000523369,0.00008229764,1.415346e-7,0.7248481,0.00001069587,0.002621002,0.0084778],"study_design_scores_gemma":[0.0006970008,0.0002884961,0.3841127,0.0001283466,0.00001428306,0.00001780896,0.00002529034,0.000007440844,0.5972423,0.000002627017,0.01739813,0.00006555665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971768,0.0005703553,0.000893074,0.00009963337,0.0001524528,0.0001394034,0.00001097616,0.00001956852,0.0009377041],"genre_scores_gemma":[0.9963837,0.002678435,0.0001300454,0.0001337086,0.00007286319,0.000005414364,0.0001409611,0.00001415872,0.0004407656],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1276058,"threshold_uncertainty_score":0.4009935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008573718108832727,"score_gpt":0.3086114114799492,"score_spread":0.3000376933711165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}