{"id":"W2140096309","doi":"10.1128/aem.00717-14","title":"Metatranscriptome of an Anaerobic Benzene-Degrading, Nitrate-Reducing Enrichment Culture Reveals Involvement of Carboxylation in Benzene Ring Activation","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario; Ontario Genomics","keywords":"Benzene; Carboxylation; Nitrate; Anaerobic exercise; Chemistry; Environmental chemistry; Enrichment culture; Biodegradation; Ring (chemistry); Biochemistry; Biology; Bacteria; Organic chemistry; Catalysis; Genetics; Physiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001972501,0.0005041877,0.0005230062,0.0005158131,0.0001955268,0.0003359488,0.0001721415,0.0002887366,0.0007167503],"category_scores_gemma":[0.0002717281,0.0001495197,0.0004735405,0.000488999,0.0001217263,0.0001939885,0.000237148,0.0004190562,0.0003676581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002013172,"about_ca_system_score_gemma":0.0004186021,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003081875,"about_ca_topic_score_gemma":0.003292009,"domain_scores_codex":[0.9997763,0.00001858711,0.00001535876,0.00006538932,0.00007809675,0.00004627022],"domain_scores_gemma":[0.9998252,0.0000472803,0.00002838587,0.00001447091,0.0000452346,0.00003945094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007752173,0.00001128952,0.0008070396,0.00001801289,0.000003273447,0.00002449061,0.00002602754,0.00002455259,0.9981843,0.000007386943,0.000006527477,0.0008096198],"study_design_scores_gemma":[0.00001995033,0.0008660898,0.1455769,0.0000282592,0.0001338121,0.0004904249,0.0004178061,0.003117562,0.8468254,0.0001077413,0.002384977,0.00003104148],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991829,0.0005517193,0.002943933,0.00007910618,0.0000272507,0.00005936357,0.00349191,0.00003379403,0.0009839433],"genre_scores_gemma":[0.9664146,0.001195375,0.0118319,0.0001849063,0.0000411407,0.0001615439,0.01337913,0.00004807552,0.00674328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003081875,"threshold_uncertainty_score":0.006127894,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006327185837774516,"score_gpt":0.1915295984548656,"score_spread":0.185202412617091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}