{"id":"W2140146732","doi":"10.1086/346048","title":"Chlamydia Trachomatis<i>omp1</i>Genotypic Diversity and Concordance with Sexual Network Data","year":2003,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Manitoba Health; University of Ottawa; University of Manitoba","funders":"","keywords":"Contact tracing; Concordance; Chlamydia trachomatis; Chlamydia; Sexual contact; Genotype; Sexually transmitted disease; Transmission (telecommunications); Biology; Medicine; Virology; Immunology; Genetics; Telecommunications; Computer science; Disease; Infectious disease (medical specialty); Gonorrhea; Pathology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008548315,0.0001395747,0.0002489332,0.00007400054,0.001137486,0.00002376756,0.0003513094,0.00005776409,0.0001674984],"category_scores_gemma":[0.0004772976,0.0000848272,0.00003047676,0.0002339631,0.0005169941,0.0003538576,0.000292773,0.0004574459,0.00002749595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004408833,"about_ca_system_score_gemma":0.0001444129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001286599,"about_ca_topic_score_gemma":0.00009623526,"domain_scores_codex":[0.9985313,0.0007065003,0.0002296747,0.000179875,0.00008801902,0.0002646695],"domain_scores_gemma":[0.9983885,0.0005513538,0.0002597619,0.0005247227,0.0002231437,0.00005248815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004331011,0.0003069913,0.9883395,0.00002086351,0.0006332378,0.00001711861,0.0003969242,0.0005216046,0.001983445,0.0003189202,0.004346479,0.002681793],"study_design_scores_gemma":[0.001950392,0.0007264641,0.9872076,0.00003652646,0.0004582251,0.003702309,0.0004015273,0.000003571899,0.0006708455,0.0009565393,0.003709313,0.0001766722],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878842,0.009865449,0.0009848025,0.00006434901,0.0003563456,0.0001850013,0.00002821356,0.00002548668,0.0006061653],"genre_scores_gemma":[0.999079,0.0004976942,0.000028874,0.00005981298,0.0001136028,0.00000173023,0.00000654095,0.00001156136,0.0002011887],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01119481,"threshold_uncertainty_score":0.8748736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02440007384428308,"score_gpt":0.2622712225924634,"score_spread":0.2378711487481803,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}