{"id":"W2140150379","doi":"10.1128/iai.69.10.6323-6335.2001","title":"Locus of Enterocyte Effacement from <i>Citrobacter rodentium</i> : Sequence Analysis and Evidence for Horizontal Transfer among Attaching and Effacing Pathogens","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Enteropathogenic Escherichia coli; Intimin; Pathogenicity island; Plasmid; Citrobacter; Microbiology; Shigella; Genetics; Mobile genetic elements; Enterobacteriaceae; Locus (genetics); Escherichia coli; Complete sequence; Sequence analysis; Gene; Pathogen; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002678389,0.0001079227,0.0001671082,0.00005520893,0.0001769159,0.00003734701,0.00003769124,0.00005976045,0.000003844782],"category_scores_gemma":[0.00009705944,0.00009988731,0.00006653734,0.0001019465,0.0001241397,0.0000210735,0.0001000551,0.00009170219,8.242214e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001322026,"about_ca_system_score_gemma":0.00001037283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002455507,"about_ca_topic_score_gemma":0.002335037,"domain_scores_codex":[0.9993153,0.0001127547,0.0001519127,0.0002125149,0.00007273859,0.0001347308],"domain_scores_gemma":[0.9996437,0.00005871191,0.00003790589,0.0001351965,0.00007262904,0.0000518994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009276042,0.00001755399,0.4369345,0.00002749274,0.0002172961,3.555287e-7,0.0001213551,0.00000826791,0.5607916,9.002026e-7,0.000001318754,0.001786617],"study_design_scores_gemma":[0.0006671508,0.0004073762,0.888643,0.00006160366,0.0002595246,0.000003721002,0.0001090413,0.0004287135,0.1090068,0.000009018804,0.0002629231,0.0001411104],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9793318,0.001386115,0.01899024,0.00002159574,0.00003331817,0.000190336,0.00002415519,0.0000059921,0.00001646122],"genre_scores_gemma":[0.9948229,0.004912714,0.0001433662,0.00002233271,0.00002553892,0.00002521769,0.00002475626,0.000005817548,0.00001739302],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4517847,"threshold_uncertainty_score":0.4073286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03718589083965214,"score_gpt":0.3206777503269063,"score_spread":0.2834918594872542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}