{"id":"W2140193394","doi":"10.1261/rna.5195504","title":"Mitochondrial 3′ tRNA editing in the jakobid <i>Seculamonas ecuadoriensis</i>: A novel mechanism and implications for tRNA processing","year":2004,"lang":"en","type":"article","venue":"RNA","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research; Université de Montréal","funders":"Université de Montréal; Canadian Institutes of Health Research; Dalhousie University; Canadian Institute for Advanced Research","keywords":"Biology; Transfer RNA; RNA editing; Genome; Genetics; Mitochondrial DNA; Mitochondrion; RNA; Gene; Nucleotide","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001103097,0.0001141695,0.0001038075,0.00002246695,0.0001757595,0.00003576278,0.0001309006,0.00007225275,2.532903e-7],"category_scores_gemma":[0.00005531979,0.00009156743,0.0000518146,0.00006449473,0.00004484747,0.0000012489,0.00005451021,0.00005243608,3.098016e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009641058,"about_ca_system_score_gemma":0.00005368949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000022198,"about_ca_topic_score_gemma":0.00008857535,"domain_scores_codex":[0.999321,0.000009515932,0.000156951,0.0002595945,0.00005179013,0.0002010916],"domain_scores_gemma":[0.9996693,0.00001485338,0.00006460344,0.0001647918,0.00005609592,0.00003033263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001894602,0.00004269397,0.0000949433,0.00001491062,0.00001555339,3.416807e-7,0.0004264404,0.00004861166,0.9930248,0.003411015,0.00007387131,0.002827922],"study_design_scores_gemma":[0.00902706,0.001047602,0.04333096,0.0001387235,0.000215578,0.0001874351,0.003410112,0.0002044168,0.8174739,0.08136392,0.04237784,0.001222473],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843357,0.001215161,0.01183086,0.001549942,0.000159268,0.0004474041,0.00004744939,0.000003392027,0.0004108246],"genre_scores_gemma":[0.9926082,0.00009841044,0.006031873,0.0004653732,0.0006061865,0.0001375258,0.00002086655,0.00001502987,0.00001655615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1755509,"threshold_uncertainty_score":0.3734012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01495042902110843,"score_gpt":0.2509174988357474,"score_spread":0.235967069814639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}