{"id":"W2140258750","doi":"10.1128/jvi.00179-11","title":"Strong Human Endogenous Retrovirus-Specific T Cell Responses Are Associated with Control of HIV-1 in Chronic Infection","year":2011,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; Fogarty International Center; University of California, San Francisco; Center for AIDS Research, University of Washington; National Institutes of Health; Consejo Nacional de Ciencia y Tecnología; Ragon Institute of MGH, MIT and Harvard; National Institute of Allergy and Infectious Diseases; Pfizer","keywords":"Biology; ELISPOT; Immunology; Viremia; Viral load; Virology; T cell; Peripheral blood mononuclear cell; CD8; Epitope; Immune system; Antibody; Virus; In vitro; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002718103,0.00007972449,0.0002458749,0.00004136358,0.00006613794,0.000005660498,0.0001097521,0.00009859507,0.0003865107],"category_scores_gemma":[0.00003566791,0.00003229334,0.0000711259,0.0001642304,0.00006715829,0.00005537445,0.00001336011,0.0001755509,0.000003813399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008003569,"about_ca_system_score_gemma":0.00002550853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000119624,"about_ca_topic_score_gemma":0.002151189,"domain_scores_codex":[0.9990628,0.0002215006,0.000347699,0.00009363431,0.0001122317,0.0001621046],"domain_scores_gemma":[0.9991065,0.0001483729,0.0005670096,0.00003333997,0.0001021548,0.00004258902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002813677,0.0002277122,0.2557195,0.000001742387,0.00002441647,0.00003070593,0.0001157065,0.00006953507,0.7430716,0.00006226845,0.00001524898,0.0003801182],"study_design_scores_gemma":[0.0009783802,0.003730534,0.9835287,0.00002041418,0.00002504957,0.00004758612,0.00005282682,0.00001181519,0.01101134,0.0001869157,0.0003430363,0.00006338058],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999035,0.000274409,0.00001953463,0.0001083528,0.00005464845,0.00007547758,0.00002474738,0.000004984482,0.000402825],"genre_scores_gemma":[0.9997405,0.00005731993,0.00001676549,0.00002385368,0.0001228339,0.000001893042,0.000003723698,8.888628e-7,0.00003221977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7320603,"threshold_uncertainty_score":0.4232022,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04733094998827193,"score_gpt":0.2207565579539451,"score_spread":0.1734256079656731,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}