{"id":"W2140351632","doi":"10.1261/rna.5246804","title":"Principles of 3′ splice site selection and alternative splicing for an unusual group II intron from <i>Bacillus anthracis</i>","year":2004,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Intron; Biology; RNA splicing; ORFS; Exon; Genetics; Group II intron; Group I catalytic intron; Exonic splicing enhancer; Bacillus anthracis; Gene; Splice site mutation; Open reading frame; Alternative splicing; RNA; Peptide sequence; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003452874,0.0002121562,0.0001289293,0.0001323851,0.0001980518,0.0003484896,0.0002394073,0.0002610469,0.0002680447],"category_scores_gemma":[0.0002641416,0.0001645569,0.0001642667,0.00007373618,0.0004209374,0.0002034359,0.0001491717,0.000449715,0.0002332432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001588156,"about_ca_system_score_gemma":0.0001312414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001121071,"about_ca_topic_score_gemma":0.0001774958,"domain_scores_codex":[0.9998673,0.00002853423,0.00001024529,0.00002896429,0.00005067138,0.00001424804],"domain_scores_gemma":[0.9998158,0.00006568516,0.00005007215,0.0000257321,0.00001832707,0.0000244068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003740215,0.00001406467,0.000982411,0.00002356831,0.000002518733,0.0001179472,0.00005257585,0.0003606144,0.9938863,0.00191324,0.00001573001,0.002593638],"study_design_scores_gemma":[0.00003810943,0.0005084713,0.0086667,0.00001700871,0.00002322001,0.001670682,0.0001312198,0.009550409,0.9707597,0.00541043,0.003197924,0.0000261725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.973265,0.0004588466,0.02403863,0.00009218237,0.00001146525,0.00001979194,0.00002118333,0.00005748421,0.002035542],"genre_scores_gemma":[0.9845135,0.000240693,0.01457868,0.00005073024,0.00001224542,0.00002295006,0.00008580037,0.00003633224,0.0004591199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0003484896,"threshold_uncertainty_score":0.001826108,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01685234812224946,"score_gpt":0.2564008161587725,"score_spread":0.239548468036523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}