{"id":"W2140450261","doi":"10.1093/molbev/msu064","title":"Divergent Positive Selection in Rhodopsin from Lake and Riverine Cichlid Fishes","year":2014,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Cichlid; Biology; Adaptive radiation; Ecology; Clade; Evolutionary biology; Zoology; Phylogenetics; Fish <Actinopterygii>; Gene; Fishery; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008806881,0.0002307446,0.0003248202,0.0007270472,0.0007435505,0.0005861511,0.0003121351,0.0004554292,0.0007201257],"category_scores_gemma":[0.001789006,0.0002512122,0.0003310223,0.0004408691,0.0006429894,0.0003040556,0.0006096259,0.0003172912,0.0001191089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006003973,"about_ca_system_score_gemma":0.0004966325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006967645,"about_ca_topic_score_gemma":0.01593863,"domain_scores_codex":[0.9996358,0.00009972209,0.00003160817,0.0001251158,0.00005717433,0.00005055048],"domain_scores_gemma":[0.998982,0.0004198187,0.0002559552,0.00008311157,0.000113484,0.0001456618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006839064,0.00005323621,0.7975835,0.0002183565,0.000485188,0.0005547919,0.004304843,0.002722911,0.1784565,0.0007811019,0.0001678197,0.01398787],"study_design_scores_gemma":[0.0000180624,0.0000716135,0.9948812,0.00001881606,0.00005843128,0.0001666177,0.0005607023,0.00231107,0.001292105,0.0002381927,0.0003624816,0.00002070405],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997347,0.00006607816,0.00004766754,0.00001213609,6.450973e-7,0.000001117928,0.00001861447,0.00000168435,0.0001173431],"genre_scores_gemma":[0.9995652,0.00004957378,0.0001958777,0.00002447767,0.000001782228,0.000004986546,0.00008351375,0.000003882852,0.00007064681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006967645,"threshold_uncertainty_score":0.01385415,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002541600229439045,"score_gpt":0.215357949921151,"score_spread":0.2128163496917119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}