{"id":"W2140450261","doi":"10.1093/molbev/msu064","title":"Divergent Positive Selection in Rhodopsin from Lake and Riverine Cichlid Fishes","year":2014,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Cichlid; Biology; Adaptive radiation; Ecology; Clade; Evolutionary biology; Zoology; Phylogenetics; Fish <Actinopterygii>; Gene; Fishery; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107876,0.0001049604,0.00009748698,0.00004453927,0.00006262072,0.000008004354,0.00003712035,0.0001525733,0.000009539584],"category_scores_gemma":[0.0000577029,0.0001029428,0.00002086113,0.00005596422,0.0000851122,0.000003974634,0.00006955512,0.00005556714,0.000002577085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008667745,"about_ca_system_score_gemma":0.00001250324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001608449,"about_ca_topic_score_gemma":0.0006728141,"domain_scores_codex":[0.9993269,0.00011,0.0001027053,0.0002859372,0.0000310989,0.00014331],"domain_scores_gemma":[0.9998423,0.000008897077,0.00003306052,0.00005347926,0.00002396257,0.00003830494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001260421,0.00002244028,0.4832973,0.000004214582,0.00002603273,0.000001066737,0.00003304056,0.00001536554,0.5131341,0.0009797896,0.00009548861,0.00226518],"study_design_scores_gemma":[0.0006357204,0.0002674737,0.9601239,0.00001047609,0.00001312785,0.000006898503,0.00002482053,0.0003302225,0.03106541,0.004454426,0.002890207,0.0001772986],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9763163,0.0008146077,0.02209402,0.0001849309,0.00005487682,0.0000852161,0.00001023385,0.000007247786,0.0004325593],"genre_scores_gemma":[0.99841,0.0002343352,0.0008047601,0.000164231,0.00003511655,0.000008653993,0.0002882141,0.000005919842,0.00004872822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4820686,"threshold_uncertainty_score":0.4197884,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002541600229439045,"score_gpt":0.215357949921151,"score_spread":0.2128163496917119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}