{"id":"W2140498399","doi":"10.1093/nar/gki047","title":"Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation","year":2004,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Genome Prairie; Genome British Columbia; Michael Smith Health Research BC; Cystic Fibrosis Foundation","keywords":"Annotation; Genome; Computer science; Database; Genome project; Workflow; Download; Relational database; Biology; World Wide Web; Information retrieval; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00167108,0.0002395059,0.000228887,0.0001618938,0.0009534623,0.0001053763,0.0004546112,0.0001592575,0.00002714748],"category_scores_gemma":[0.00020684,0.0002439556,0.0000660244,0.0002548863,0.0006106884,0.000003998822,0.0006070649,0.0005519022,0.00003914601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005711822,"about_ca_system_score_gemma":0.0002279857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003168236,"about_ca_topic_score_gemma":0.0001602464,"domain_scores_codex":[0.9977171,0.0004534802,0.0003190911,0.000492946,0.0003895279,0.0006278128],"domain_scores_gemma":[0.99849,0.00009254531,0.00006893241,0.0007192182,0.00043705,0.0001921917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001110438,0.0001103152,0.001438743,0.00006252259,0.00006931465,0.00001153268,0.0009246399,0.0003767312,0.9955222,0.0003953858,0.0001076034,0.0008699896],"study_design_scores_gemma":[0.0249479,0.01001974,0.1698172,0.0002538838,0.0002049961,0.0003243895,0.03125796,0.000800261,0.3852943,0.01473161,0.3578663,0.00448149],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951419,0.001218589,0.0008940063,0.0005085376,0.00004652247,0.0004304764,0.0004999797,0.0000104188,0.001249604],"genre_scores_gemma":[0.9885519,0.0003660863,0.009470861,0.00031691,0.0001309974,0.0000515495,0.0009197878,0.00004106387,0.0001508014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6102279,"threshold_uncertainty_score":0.9948221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04276087282058166,"score_gpt":0.3196586090525323,"score_spread":0.2768977362319506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}