{"id":"W2140498399","doi":"10.1093/nar/gki047","title":"Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation","year":2004,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Genome Prairie; Genome British Columbia; Michael Smith Health Research BC; Cystic Fibrosis Foundation","keywords":"Annotation; Genome; Computer science; Database; Genome project; Workflow; Download; Relational database; Biology; World Wide Web; Information retrieval; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01316349,0.001461965,0.001461813,0.007443601,0.001950108,0.006131717,0.004838811,0.00131927,0.01331688],"category_scores_gemma":[0.02176155,0.00123377,0.001052364,0.007726427,0.0005034083,0.005737287,0.006163723,0.002525488,0.01501784],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001049204,"about_ca_system_score_gemma":0.004872138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005901925,"about_ca_topic_score_gemma":0.008252137,"domain_scores_codex":[0.9946367,0.001548973,0.0007048336,0.0008377793,0.001932233,0.0003395652],"domain_scores_gemma":[0.979932,0.005082833,0.001004821,0.006089603,0.005090093,0.002800618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003416968,0.001173376,0.007990787,0.002814359,0.0002895042,0.001484229,0.001961772,0.003679457,0.05644659,0.01149166,0.5446334,0.3646178],"study_design_scores_gemma":[0.0009974206,0.0004112567,0.01183448,0.0004468821,0.0001719108,0.001083355,0.0009981962,0.02868049,0.04269798,0.01414718,0.8978723,0.000658477],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.03599137,0.001878544,0.3789069,0.003394012,0.001226942,0.003610685,0.2617636,0.2746492,0.0385788],"genre_scores_gemma":[0.03711583,0.001354308,0.5287196,0.0008129376,0.0002521622,0.002081963,0.4045013,0.01438972,0.01077213],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01331688,"threshold_uncertainty_score":0.06961602,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04276087282058166,"score_gpt":0.3196586090525323,"score_spread":0.2768977362319506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}