{"id":"W2140648654","doi":"10.1128/aem.02470-13","title":"Differential Induction of Antimicrobial REGIII by the Intestinal Microbiota and Bifidobacterium breve NCC2950","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; McMaster University; Population Health Research Institute","funders":"","keywords":"Bifidobacterium breve; Biology; Microbiology; Bifidobacterium; Probiotic; Antimicrobial peptides; Gut flora; Antimicrobial; Bacteria; Immunology; Genetics; Lactobacillus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005371796,0.0002139059,0.0002111335,0.00002788937,0.0001336614,0.00001928086,0.0001302887,0.0002196621,0.00009109027],"category_scores_gemma":[0.000002535661,0.0001623137,0.00003991293,0.0000287994,0.0007058078,0.000005087526,0.0002554879,0.0001480905,0.00001586283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000130221,"about_ca_system_score_gemma":0.00001240378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008903167,"about_ca_topic_score_gemma":0.000006747639,"domain_scores_codex":[0.9989926,0.00004719056,0.0002501245,0.0004067024,0.00002018164,0.0002831997],"domain_scores_gemma":[0.9995782,0.00001227162,0.0001286037,0.0002117503,0.000006255597,0.00006290646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004260245,0.00007234653,0.001430211,0.00002337611,0.00003443595,1.354288e-7,0.00006089918,1.650799e-7,0.9884481,0.00001701052,0.007683748,0.002186958],"study_design_scores_gemma":[0.0009508145,0.0002228004,0.02965282,0.00001180381,0.00003327015,0.0004312826,0.0002384634,0.000001279425,0.95255,0.00001847378,0.01562224,0.0002667342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984961,0.0003616878,0.00007905837,0.0003760598,0.0001062972,0.0003557751,0.00014665,0.000005868849,0.00007252287],"genre_scores_gemma":[0.9976038,0.0005229377,0.0001891735,0.0005189876,0.00008985406,0.00001715319,0.0007957788,0.00001958806,0.0002427442],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0358981,"threshold_uncertainty_score":0.661896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003030788570955602,"score_gpt":0.167696925915172,"score_spread":0.1646661373442164,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}