{"id":"W2140736855","doi":"10.1186/gm486","title":"BAIT: Organizing genomes and mapping rearrangements in single cells","year":2013,"lang":"en","type":"article","venue":"Genome Medicine","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Institutes of Health; Canadian Institutes of Health Research; Terry Fox Foundation","keywords":"Sister chromatids; Genome; Computational biology; Software; Biology; Computer science; Reference genome; Genetics; Gene; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009395548,0.0009681027,0.0009778398,0.00151157,0.00114085,0.001456733,0.001194168,0.001115157,0.006927679],"category_scores_gemma":[0.001357659,0.001303239,0.0006017637,0.001006614,0.0007363752,0.0009840801,0.001573322,0.001398801,0.004427403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008693901,"about_ca_system_score_gemma":0.0006762823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001665103,"about_ca_topic_score_gemma":0.004700779,"domain_scores_codex":[0.9992505,0.00008379096,0.00004909126,0.000274603,0.0002815429,0.00006046188],"domain_scores_gemma":[0.9993167,0.0002440408,0.0001107332,0.0001435865,0.00007328335,0.0001115897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001646981,0.00003770828,0.001197085,0.0002132249,0.00003271734,0.00008192369,0.0000973784,0.0006065358,0.9759561,0.001262169,0.003632507,0.01671796],"study_design_scores_gemma":[0.00008498628,0.0001945827,0.005626574,0.00004453589,0.00004275735,0.0004993044,0.00006422746,0.01773751,0.9341434,0.001879456,0.03961916,0.00006356528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2137974,0.00287079,0.7021988,0.001039067,0.0004317628,0.0008577265,0.02288685,0.04695524,0.008962426],"genre_scores_gemma":[0.1702306,0.001616698,0.7877356,0.0005601007,0.00009530291,0.001163088,0.02230706,0.006179747,0.01011173],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006927679,"threshold_uncertainty_score":0.02317536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009268064953422044,"score_gpt":0.1960709240224339,"score_spread":0.1868028590690118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}