{"id":"W2140776507","doi":"10.1128/aac.01118-08","title":"Novel Staphylococcal Cassette Chromosome <i>mec</i> Type, Tentatively Designated Type VIII, Harboring Class A <i>mec</i> and Type 4 <i>ccr</i> Gene Complexes in a Canadian Epidemic Strain of Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2008,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":196,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"SCCmec; Biology; Genetics; Mobile genetic elements; Gene; Chromosome; Staphylococcus epidermidis; Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005704662,0.0007400949,0.001394871,0.0005054629,0.0003267106,0.00005472319,0.0003175631,0.0004626713,0.0001026899],"category_scores_gemma":[0.000126846,0.0007100958,0.0001726637,0.001398903,0.0009026685,0.0002052279,0.00008886687,0.0007044298,0.00000930129],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002916236,"about_ca_system_score_gemma":0.00109436,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03352799,"about_ca_topic_score_gemma":0.0156939,"domain_scores_codex":[0.9961004,0.000143968,0.001112799,0.001003891,0.0004114709,0.001227515],"domain_scores_gemma":[0.997702,0.0001802578,0.0004200307,0.000505646,0.0005490071,0.0006430465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001797228,0.0003535531,0.0377381,0.0002408972,0.0002917902,0.0003045275,0.0009403693,0.00003350305,0.9492079,0.00008087201,0.008651555,0.0003596978],"study_design_scores_gemma":[0.01783451,0.001938785,0.2078538,0.001648819,0.0004020445,0.0002957523,0.0004207327,0.000610706,0.6908395,0.0001053054,0.07561857,0.002431534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947107,0.0007209199,0.0001552714,0.001860492,0.0002448606,0.001284063,0.0006809186,0.00006988462,0.0002728183],"genre_scores_gemma":[0.9786716,0.004925279,0.00428281,0.01143772,0.0001401351,0.00001181515,0.0001675341,0.0001470915,0.0002160401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2583685,"threshold_uncertainty_score":0.999535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04079152295943888,"score_gpt":0.2898935050068582,"score_spread":0.2491019820474193,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}