{"id":"W2140934347","doi":"10.1142/s0219720013500029","title":"WHOLE GENOME IDENTITY-BY-DESCENT DETERMINATION","year":2012,"lang":"en","type":"article","venue":"Journal of Bioinformatics and Computational Biology","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Agricultural Research Institute","keywords":"Haplotype; Identity by descent; Haplotype estimation; Genetics; Genotyping; Genome; Biology; Linkage (software); Mendelian inheritance; Allele; Genotype; Computational biology; Single-nucleotide polymorphism; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005581848,0.00008358482,0.0001539797,0.00006738797,0.00007007292,0.0000159316,0.0000945482,0.0001141439,0.000007685958],"category_scores_gemma":[0.000100515,0.00006997578,0.000061185,0.00004789958,0.00006113898,0.00002469696,0.00005804629,0.0000712734,0.000007555896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001623715,"about_ca_system_score_gemma":0.00003904246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001297869,"about_ca_topic_score_gemma":7.023807e-7,"domain_scores_codex":[0.9991848,0.00005710803,0.0004532109,0.00005317633,0.00007935458,0.0001723671],"domain_scores_gemma":[0.9992282,0.00003944725,0.0004142273,0.00005428648,0.0001696476,0.00009417954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002762241,0.001099837,0.4507515,0.0002275789,0.001089838,0.000002868582,0.002819656,0.006076093,0.3600425,0.01193638,0.02906753,0.13661],"study_design_scores_gemma":[0.004154628,0.00330182,0.6595273,0.00004226557,0.0002118508,0.001212879,0.001610896,0.0221082,0.001675199,0.02061445,0.2844884,0.001052064],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7531664,0.001574244,0.2443459,0.0003868053,0.0002304726,0.00005743627,0.00004076259,0.000002118512,0.00019593],"genre_scores_gemma":[0.9690433,0.0002492731,0.02973568,0.0005227883,0.0002076565,0.000001442581,0.0002027913,0.000004797467,0.00003234452],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3583673,"threshold_uncertainty_score":0.2853529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0106751635985702,"score_gpt":0.2744912583305859,"score_spread":0.2638160947320157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}