{"id":"W2141010664","doi":"10.1128/iai.69.8.5207-5211.2001","title":"Evolutionary Relationships among Virulence-Associated Histidine Kinases","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Streptomyces coelicolor; Histidine kinase; Phylogenetic tree; Histidine; Genetics; Eukaryote; Phylogenetics; Subfamily; Kinase; Horizontal gene transfer; Gene; Microbiology; Streptomyces; Genome; Bacteria; Amino acid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002394797,0.00008242504,0.0001215868,0.00009180345,0.0003850564,0.00001406113,0.00001933228,0.0001000121,0.0003323783],"category_scores_gemma":[0.0009227962,0.00006746122,0.00004243813,0.0002624911,0.00009922683,0.0001427082,0.00002426321,0.0003160428,0.00002499452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008577298,"about_ca_system_score_gemma":0.00002194283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00194907,"about_ca_topic_score_gemma":0.0001885137,"domain_scores_codex":[0.9994438,0.000116116,0.0001419733,0.0001164645,0.00007330861,0.0001083032],"domain_scores_gemma":[0.9995649,0.00006978118,0.00005928916,0.0001274809,0.0001190142,0.00005954673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001192905,0.0003299559,0.9478873,0.00002467751,0.00005190254,0.000007815095,0.00007811966,0.000001963308,0.03958071,0.0001259928,0.005294672,0.00649757],"study_design_scores_gemma":[0.0003239288,0.0001053904,0.981397,0.00006992572,0.00004957009,0.00007853167,0.00002363379,0.0000752605,0.002528577,0.0001195349,0.0151457,0.00008296037],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952728,0.0003840045,0.00001352159,0.0007864878,0.0001553513,0.0001374001,0.00000448001,0.0001003486,0.003145627],"genre_scores_gemma":[0.9966391,0.0008772329,0.0000331458,0.0001147687,0.00007725137,9.789073e-7,0.00004711745,0.000006130481,0.002204252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03705213,"threshold_uncertainty_score":0.363931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03634242312525703,"score_gpt":0.2502564718584891,"score_spread":0.2139140487332321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}