{"id":"W2141284512","doi":"10.1158/1078-0432.ccr-10-1551","title":"Array-Based Comparative Genomic Hybridization Identifies <i>CDK4</i> and <i>FOXM1</i> Alterations as Independent Predictors of Survival in Malignant Peripheral Nerve Sheath Tumor","year":2011,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Neurofibromatosis and Schwannoma Cases","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University Health Network","funders":"","keywords":"Comparative genomic hybridization; Biology; FOXM1; Candidate gene; Malignant peripheral nerve sheath tumor; Tissue microarray; Cancer research; Fluorescence in situ hybridization; Microarray; Microarray analysis techniques; Copy-number variation; Cancer; Gene expression profiling; Gene; In situ hybridization; Immunohistochemistry; Pathology; Gene expression; Genetics; Cell cycle; Genome; Medicine; Chromosome; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001677556,0.0001619749,0.000612341,0.0002088549,0.0001200795,0.00004802023,0.0001592936,0.00007974673,0.0003079685],"category_scores_gemma":[0.0002978832,0.000136169,0.0001196128,0.0003538254,0.000596657,0.0001312798,0.00009362887,0.0005462895,0.0000111769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009684928,"about_ca_system_score_gemma":0.0007735973,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001520786,"about_ca_topic_score_gemma":0.0007412714,"domain_scores_codex":[0.9967957,0.0007145139,0.0009325054,0.000522165,0.0006662465,0.0003689081],"domain_scores_gemma":[0.9983461,0.0004934685,0.0001476049,0.0003476935,0.000396873,0.0002681832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002173963,0.0008242121,0.9436175,0.0001819398,0.00007165686,0.000271386,0.001192532,0.0000370046,0.05013817,0.00036041,0.001005211,0.0001259649],"study_design_scores_gemma":[0.003913492,0.002342749,0.8897842,0.0004489102,0.00006222689,0.00004125923,0.0009187539,0.000548668,0.1009744,0.0002427922,0.0005036733,0.0002188736],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965935,0.0005457985,0.00004964812,0.0002712937,0.0003221582,0.0007630453,0.00006571916,0.00002096842,0.001367844],"genre_scores_gemma":[0.9989721,0.0001561668,0.000154357,0.000148272,0.0001810251,0.0001284667,0.00003060775,0.00002399678,0.0002050483],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05383335,"threshold_uncertainty_score":0.5552811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2229361302795161,"score_gpt":0.4414306515887627,"score_spread":0.2184945213092466,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}