{"id":"W2141328595","doi":"10.1186/s13058-014-0470-2","title":"Profiling gene promoter occupancy of Sox2 in two phenotypically distinct breast cancer cell subsets using chromatin immunoprecipitation and genome-wide promoter microarrays","year":2014,"lang":"en","type":"article","venue":"Breast Cancer Research","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Defence Research and Development Canada; McGill University; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Cancer Foundation","keywords":"Chromatin immunoprecipitation; SOX2; Biology; Promoter; Molecular biology; Gene; Transcription factor; Chromatin; Gene expression; Gene knockdown; Cancer research; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001386055,0.000312989,0.0006479528,0.0003013648,0.0001535835,0.00006526527,0.0002186506,0.0001098116,0.0006457393],"category_scores_gemma":[0.00004574867,0.0002720272,0.0001037994,0.0006038766,0.0002991161,0.0002152813,0.0001923505,0.0005193627,0.000008417202],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007721843,"about_ca_system_score_gemma":0.0008237145,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01779023,"about_ca_topic_score_gemma":0.003214099,"domain_scores_codex":[0.9966115,0.0003350731,0.0006715538,0.0007247692,0.00079394,0.0008631643],"domain_scores_gemma":[0.9982221,0.0001141511,0.0002075102,0.0005049332,0.0006785487,0.0002727376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00153954,0.0003386942,0.1630166,0.001319377,0.00007453626,0.00001200581,0.001073964,0.0000399711,0.7920824,0.000007931833,0.00002155643,0.04047338],"study_design_scores_gemma":[0.005468598,0.000178535,0.8614304,0.001196808,0.000137173,0.0001887964,0.0002478488,0.001389051,0.129027,0.00007430221,0.0002417364,0.0004197425],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935465,0.002862797,0.0003885432,0.0007325287,0.0001212574,0.001519175,0.000436089,0.00002571535,0.000367346],"genre_scores_gemma":[0.9945111,0.0004289969,0.003996262,0.00006895047,0.0004155733,0.0002738788,0.00005325396,0.00008417395,0.0001678041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6984138,"threshold_uncertainty_score":0.9999732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04039664868352707,"score_gpt":0.3659824181007547,"score_spread":0.3255857694172276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}