{"id":"W2141328595","doi":"10.1186/s13058-014-0470-2","title":"Profiling gene promoter occupancy of Sox2 in two phenotypically distinct breast cancer cell subsets using chromatin immunoprecipitation and genome-wide promoter microarrays","year":2014,"lang":"en","type":"article","venue":"Breast Cancer Research","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Defence Research and Development Canada; McGill University; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Cancer Foundation","keywords":"Chromatin immunoprecipitation; SOX2; Biology; Promoter; Molecular biology; Gene; Transcription factor; Chromatin; Gene expression; Gene knockdown; Cancer research; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001987229,0.0002093487,0.0002670753,0.0004151212,0.0001418411,0.0003538384,0.0001666817,0.000164067,0.001036663],"category_scores_gemma":[0.0002046228,0.0001645706,0.0002791178,0.000345638,0.0001803428,0.0001166986,0.0001836922,0.0002860212,0.0003302632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001837961,"about_ca_system_score_gemma":0.0001790264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005996561,"about_ca_topic_score_gemma":0.001553917,"domain_scores_codex":[0.9997287,0.00002399714,0.000015856,0.0001152301,0.00007399273,0.00004214266],"domain_scores_gemma":[0.9998416,0.00004898753,0.00003740384,0.00001523211,0.00003304499,0.00002372371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000901227,0.00001132098,0.003692575,0.00004363014,0.00001177853,0.0000147516,0.00003250143,0.00006475206,0.9946018,0.00002432166,0.00003674331,0.001375644],"study_design_scores_gemma":[0.00001340119,0.0001600234,0.1181565,0.00001002254,0.00005780592,0.0003147267,0.0001200548,0.002439048,0.8768392,0.00007002921,0.00180619,0.00001313265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860453,0.0009905347,0.009289338,0.00005363417,0.00001275903,0.00002547838,0.002818253,0.0001075368,0.0006571123],"genre_scores_gemma":[0.9782898,0.0006397612,0.01195582,0.00009898005,0.00001478768,0.000118411,0.007000457,0.00003904899,0.001842882],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001036663,"threshold_uncertainty_score":0.003468037,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04039664868352707,"score_gpt":0.3659824181007547,"score_spread":0.3255857694172276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}