{"id":"W2141395565","doi":"10.1093/carcin/bgt273","title":"Transcription onset of genes critical in liver carcinogenesis is epigenetically regulated by methylated DNA-binding protein MBD2","year":2013,"lang":"en","type":"article","venue":"Carcinogenesis","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Ministère du Développement Économique, de l’Innovation et de l’Exportation","keywords":"DNA methylation; Molecular biology; Promoter; Biology; Chromatin immunoprecipitation; RNA polymerase II; CEBPA; Methylated DNA immunoprecipitation; Gene; Transcription factor; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004032862,0.0003898237,0.0004617799,0.0002337757,0.00010444,0.00004219047,0.0003221058,0.000536115,0.0003121078],"category_scores_gemma":[0.0001717018,0.0004056857,0.0002412203,0.0004478961,0.0002291624,0.00002335364,0.00009077608,0.000118119,0.00003426242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005371483,"about_ca_system_score_gemma":0.0001161305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005506441,"about_ca_topic_score_gemma":0.00006153376,"domain_scores_codex":[0.9971165,0.00034902,0.0007870483,0.0007834743,0.0003723408,0.000591627],"domain_scores_gemma":[0.9984946,0.00005470294,0.0001507126,0.0006211899,0.0004447232,0.0002340204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007164229,0.0001436149,0.02110048,0.0001043664,0.00005884922,0.000005187329,0.00009960627,0.00002510613,0.9713082,0.00003512286,0.0001839946,0.006863856],"study_design_scores_gemma":[0.0005648624,0.0003006051,0.05060659,0.00004375513,0.00007423574,0.000004200339,0.00008032889,0.0002846676,0.9468191,0.0001888933,0.0006074744,0.0004252541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854093,0.01207823,0.0009808796,0.0002791497,0.0001053554,0.0008128187,0.000148015,0.00002256332,0.000163708],"genre_scores_gemma":[0.996507,0.0009866422,0.001449765,0.00008946905,0.00006987941,0.000184637,0.000270529,0.00007773531,0.0003643308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02950611,"threshold_uncertainty_score":0.9998395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0149002006962904,"score_gpt":0.2469736767005708,"score_spread":0.2320734760042804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}