{"id":"W2141531223","doi":"10.1093/molbev/msh189","title":"Evolution of the Transposable Element Pokey in the Ribosomal DNA of Species in the Subgenus Daphnia (Crustacea: Cladocera)","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Transposable element; Subgenus; Ribosomal DNA; Ribosomal RNA; Genetics; Daphnia pulex; Phylogenetic tree; Retrotransposon; Horizontal gene transfer; Cladocera; Daphnia; Evolutionary biology; Genus; Zoology; Crustacean; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001292292,0.000239932,0.0001693918,0.0008074951,0.000384908,0.0002926337,0.0001789362,0.0002694671,0.0004329607],"category_scores_gemma":[0.00035263,0.0002122556,0.0001433636,0.0004207711,0.0003553392,0.0003228078,0.000540388,0.000287053,0.0001735958],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003084216,"about_ca_system_score_gemma":0.0001814684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001079862,"about_ca_topic_score_gemma":0.002475084,"domain_scores_codex":[0.9998486,0.00001791322,0.000009193285,0.00006249186,0.00002549211,0.00003627668],"domain_scores_gemma":[0.9998055,0.00003604207,0.00006600285,0.00001635765,0.0000238923,0.00005221315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000180071,0.0000275823,0.05703982,0.00004174526,0.00002536111,0.000181062,0.0005305053,0.0001411572,0.9336209,0.0002252025,0.00001203284,0.007974578],"study_design_scores_gemma":[0.00001110884,0.000366781,0.9603159,0.00002022525,0.00006344854,0.001443072,0.0007346664,0.0007187492,0.03453533,0.0002088488,0.001566075,0.00001580742],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994785,0.00008222778,0.0001909708,0.000004156735,8.417559e-7,0.000002634648,0.00002560863,0.000003021976,0.0002120833],"genre_scores_gemma":[0.9990313,0.00009837189,0.0004553755,0.00001070267,0.00000136185,0.000003992703,0.0001398096,0.000003336875,0.0002558527],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001079862,"threshold_uncertainty_score":0.002237797,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008290036921959197,"score_gpt":0.2090386656400299,"score_spread":0.2007486287180707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}