{"id":"W2141531223","doi":"10.1093/molbev/msh189","title":"Evolution of the Transposable Element Pokey in the Ribosomal DNA of Species in the Subgenus Daphnia (Crustacea: Cladocera)","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Transposable element; Subgenus; Ribosomal DNA; Ribosomal RNA; Genetics; Daphnia pulex; Phylogenetic tree; Retrotransposon; Horizontal gene transfer; Cladocera; Daphnia; Evolutionary biology; Genus; Zoology; Crustacean; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002944721,0.00007205521,0.00009476391,0.00001408487,0.0001099407,0.000005445897,0.0002086907,0.0000865172,0.00001501136],"category_scores_gemma":[0.00002396734,0.00002222002,0.00005790612,0.0003786069,0.0001627236,0.0000229474,0.00002388067,0.00009660166,8.537417e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003492045,"about_ca_system_score_gemma":0.00001831518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001036886,"about_ca_topic_score_gemma":0.0057211,"domain_scores_codex":[0.9991931,0.000236013,0.000192938,0.0001318367,0.00009875235,0.0001473955],"domain_scores_gemma":[0.9997841,0.00004643595,0.00006532065,0.00006944052,0.00002499069,0.000009672673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003375671,0.0001731349,0.1997055,0.000007366261,0.000008489802,0.000001386704,0.0006686266,0.0004146585,0.7194543,0.07921444,0.000009941268,0.0003083808],"study_design_scores_gemma":[0.0002444819,0.0001959228,0.9705943,0.00001407684,0.00001230198,0.000007638032,0.0006924358,0.00004105407,0.005938183,0.02194522,0.0002654258,0.00004899467],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949294,0.0007491992,0.0001219446,0.003658159,0.00004425898,0.0002560191,0.00003160405,0.000002932103,0.0002064501],"genre_scores_gemma":[0.9997814,0.00003816911,0.00002961944,0.0000819088,0.00002882123,0.00001394418,0.00001949482,3.755587e-7,0.000006219637],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7708887,"threshold_uncertainty_score":0.3192508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008290036921959197,"score_gpt":0.2090386656400299,"score_spread":0.2007486287180707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}