{"id":"W2141636714","doi":"10.1111/ede.12081","title":"Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles","year":2014,"lang":"en","type":"article","venue":"Evolution & Development","topic":"Paleontology and Evolutionary Biology","field":"Earth and Planetary Sciences","cited_by":133,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Center for Advancing Translational Sciences; National Aeronautics and Space Administration","keywords":"Biology; Phylogenetic tree; Phylogenetics; Sister group; Turtle (robot); Evolutionary biology; Consilience; Most recent common ancestor; Painted turtle; Zoology; Gene; Clade; Genetics; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001104177,0.0001933745,0.0002669909,0.0001565555,0.0002795809,0.00001403957,0.0002923098,0.0001857168,0.00075235],"category_scores_gemma":[0.0002529778,0.0001782566,0.00005128459,0.0001637083,0.0003188093,0.0002254287,0.0000192913,0.0001708898,0.000341319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004259525,"about_ca_system_score_gemma":0.0003786636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004307124,"about_ca_topic_score_gemma":0.01409856,"domain_scores_codex":[0.9980689,0.0002227261,0.0004384981,0.0005227756,0.0001807138,0.0005663896],"domain_scores_gemma":[0.9991823,0.0002454295,0.0001189277,0.0002137626,0.00006953171,0.0001700701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002888998,0.00008785863,0.9717349,0.00002657254,0.00001880088,0.000007016028,0.0008893051,0.000960235,0.000540517,0.002613415,0.001377027,0.02145547],"study_design_scores_gemma":[0.0004807157,0.0001951421,0.9555146,0.000010133,0.000004975159,0.00003303961,0.0001236027,0.003576491,0.0002408085,0.003556579,0.03601298,0.0002510027],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874456,0.0002149453,0.005644886,0.0008501759,0.0008526397,0.0003918652,0.00006390801,0.00008612449,0.004449877],"genre_scores_gemma":[0.9838498,0.00002186781,0.01491439,0.0005345112,0.00009118304,0.00002646611,0.0003536502,0.000003308181,0.000204877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03463595,"threshold_uncertainty_score":0.8237705,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0363264819699369,"score_gpt":0.2482743588046992,"score_spread":0.2119478768347623,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}