{"id":"W2141828080","doi":"10.1093/nar/gki531","title":"Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":197,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Human Genome Research Institute; National Institutes of Health; McGill University","keywords":"Pseudogene; Biology; Gene; Genetics; Intergenic region; Human genome; Genome; Coding region; Untranslated region; TBX1; Promoter; Computational biology; Gene expression; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001376525,0.0002645865,0.0002027645,0.000534687,0.0001661281,0.0003155073,0.0001619028,0.0002705253,0.002587197],"category_scores_gemma":[0.0004013293,0.0001391491,0.0002712692,0.0005727185,0.0002217369,0.0001823668,0.0002046278,0.0002447788,0.001126675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000117838,"about_ca_system_score_gemma":0.0002160987,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002568377,"about_ca_topic_score_gemma":0.0003390556,"domain_scores_codex":[0.9998533,0.00001513208,0.00001337103,0.00005107052,0.00004779227,0.00001932235],"domain_scores_gemma":[0.9996972,0.00009372558,0.00007582489,0.00004860383,0.00004488771,0.00003979517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002693367,0.00001500544,0.007861032,0.0001325685,0.00002401334,0.001045141,0.0001159907,0.00008387228,0.9850532,0.0003481169,0.00008894953,0.004962787],"study_design_scores_gemma":[0.00006086932,0.000802232,0.2084816,0.00009030628,0.0002204754,0.01573081,0.0005910535,0.002218629,0.7427367,0.001884726,0.02714466,0.00003804759],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.979183,0.002099115,0.01388052,0.00008689793,0.00003419097,0.00003752716,0.002376277,0.0001634701,0.002139035],"genre_scores_gemma":[0.9629319,0.0008598877,0.02146812,0.0001567656,0.00003470414,0.00006727054,0.01131827,0.00006861539,0.003094573],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002587197,"threshold_uncertainty_score":0.008655071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06015550313545004,"score_gpt":0.3459673779313857,"score_spread":0.2858118747959356,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}