{"id":"W2141828080","doi":"10.1093/nar/gki531","title":"Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":197,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Human Genome Research Institute; National Institutes of Health; McGill University","keywords":"Pseudogene; Biology; Gene; Genetics; Intergenic region; Human genome; Genome; Coding region; Untranslated region; TBX1; Promoter; Computational biology; Gene expression; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00320738,0.0001632673,0.0002023382,0.0001201522,0.0002138632,0.00007547286,0.001027961,0.000196315,0.00006881567],"category_scores_gemma":[0.0002676442,0.0001256513,0.0000811721,0.0002901169,0.0002959141,0.00003542903,0.0001125556,0.0002972018,0.000005053114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004501972,"about_ca_system_score_gemma":0.0001086968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004522776,"about_ca_topic_score_gemma":0.0001070445,"domain_scores_codex":[0.9975246,0.0005293749,0.000382302,0.0004864105,0.0005548721,0.0005224917],"domain_scores_gemma":[0.9988577,0.0000370042,0.00008255939,0.0007172168,0.0002252369,0.00008028495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001369367,0.0001396171,0.0004664038,0.0001240196,0.000009629207,0.000003110379,0.001748583,0.000005193449,0.9908689,0.0002491947,0.000006091565,0.006242266],"study_design_scores_gemma":[0.0004342961,0.0004794558,0.004646817,0.00005893319,0.000003325591,0.000003238941,0.0008116528,0.00005598724,0.9911011,0.001503349,0.0007550662,0.0001468212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974842,0.0001974548,0.0004716897,0.0002703889,0.00001230632,0.0009449421,0.00001375046,0.00001207365,0.0005931914],"genre_scores_gemma":[0.9983491,0.00005927903,0.0009748451,0.00004685306,0.0001799824,0.0002709322,0.00002653327,0.00002929372,0.00006321762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006095445,"threshold_uncertainty_score":0.5123913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06015550313545004,"score_gpt":0.3459673779313857,"score_spread":0.2858118747959356,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}