{"id":"W2141939573","doi":"10.1186/1471-2164-15-873","title":"A consensus framework map of durum wheat (Triticum durum Desf.) suitable for linkage disequilibrium analysis and genome-wide association mapping","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Università di Bologna; Genome Prairie; Agriculture and Agri-Food Canada; Western Grains Research Foundation; Ministry of Agriculture - Saskatchewan; Genome Canada","keywords":"Biology; Locus (genetics); Linkage disequilibrium; Genetics; Common wheat; Genome; Association mapping; Quantitative trait locus; Genetic diversity; Genomics; Reference genome; Evolutionary biology; Genotype; Haplotype; Population; Gene; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000344108,0.0005821496,0.0006062886,0.001787168,0.0005577658,0.0005017828,0.0004765256,0.0003162083,0.003121011],"category_scores_gemma":[0.0009536244,0.0002892805,0.0007610578,0.002115443,0.0001070712,0.0002255384,0.0005033771,0.0004870519,0.001016762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004418017,"about_ca_system_score_gemma":0.00107328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006816152,"about_ca_topic_score_gemma":0.01192789,"domain_scores_codex":[0.9997184,0.00002111081,0.00001312351,0.0001427992,0.00005795976,0.00004672849],"domain_scores_gemma":[0.9996212,0.00006975697,0.00007012716,0.00003315585,0.0001332759,0.00007256636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001152943,0.0002548457,0.01421313,0.000917669,0.0002050013,0.001083564,0.0005296955,0.005935359,0.8224768,0.002500461,0.002147438,0.1485832],"study_design_scores_gemma":[0.0008040086,0.002101387,0.5160357,0.0005311279,0.001539901,0.007767911,0.0009216795,0.06191703,0.2655523,0.009176441,0.1333888,0.0002636416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6391651,0.001353338,0.3222088,0.0001032014,0.00006434646,0.0007657292,0.02883071,0.001725182,0.005783545],"genre_scores_gemma":[0.6055226,0.000608212,0.3266012,0.00004085406,0.00001900617,0.0004173593,0.06308366,0.0002662893,0.003440777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006816152,"threshold_uncertainty_score":0.01355296,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01856088886747231,"score_gpt":0.2167265827211221,"score_spread":0.1981656938536498,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}