{"id":"W2142061454","doi":"10.1186/s13567-014-0096-5","title":"Gene-expression profiling of calves 6 and 9 months after inoculation with Mycobacterium avium subspecies paratuberculosis","year":2014,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development; University of Alberta; University of Calgary","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Dairy Farmers of Canada","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Paratuberculosis; Antigen; Gene expression profiling; Downregulation and upregulation; Gene expression; Immune system; Antibody; Immunology; Gene; Microbiology; Virology; Mycobacterium; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000890306,0.0001812984,0.0003482191,0.0003751057,0.0001336089,0.00006948804,0.0001111466,0.0001288357,0.0001804817],"category_scores_gemma":[0.0002704096,0.0001305007,0.00006035993,0.000381892,0.0003524902,0.0002455653,0.0002359626,0.0003598995,0.00002333043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005467693,"about_ca_system_score_gemma":0.00009137181,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006362692,"about_ca_topic_score_gemma":0.000005508899,"domain_scores_codex":[0.9974554,0.0003762285,0.000275863,0.0004412014,0.0008896237,0.0005616619],"domain_scores_gemma":[0.9983026,0.0003450933,0.00005149677,0.0004972217,0.0004641277,0.0003394694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003440823,0.0001367307,0.2880447,0.0005941638,0.00003044598,0.0000837933,0.0002250664,0.000001090258,0.7062339,0.00002298556,0.0001821775,0.001004161],"study_design_scores_gemma":[0.0009140949,0.004234007,0.6108458,0.0003911848,0.00002139315,0.0001162311,0.0001384421,0.0001810396,0.3818171,0.00004513841,0.001154447,0.0001411783],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99664,0.0005209491,0.0000562421,0.0003306234,0.00003485687,0.0006447865,0.00002045784,0.0000331245,0.001718918],"genre_scores_gemma":[0.9951192,0.0004507141,0.003673411,0.00003261449,0.0001903517,0.0002597386,0.00005134621,0.00003402166,0.0001885996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3244168,"threshold_uncertainty_score":0.5321665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05608371643487647,"score_gpt":0.3489524103361886,"score_spread":0.2928686939013121,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}