{"id":"W2142061454","doi":"10.1186/s13567-014-0096-5","title":"Gene-expression profiling of calves 6 and 9 months after inoculation with Mycobacterium avium subspecies paratuberculosis","year":2014,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development; University of Alberta; University of Calgary","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Dairy Farmers of Canada","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Paratuberculosis; Antigen; Gene expression profiling; Downregulation and upregulation; Gene expression; Immune system; Antibody; Immunology; Gene; Microbiology; Virology; Mycobacterium; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001877201,0.0002442484,0.0006258222,0.0005248754,0.0002460177,0.0006289962,0.0001844068,0.000462951,0.0007166379],"category_scores_gemma":[0.0002537008,0.000123488,0.0003147991,0.000525974,0.0002231073,0.0001930316,0.0001806315,0.000617899,0.0002952002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004065578,"about_ca_system_score_gemma":0.0002679604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003129466,"about_ca_topic_score_gemma":0.004683114,"domain_scores_codex":[0.9997074,0.00001865722,0.000009807859,0.0001030452,0.00006832147,0.00009282658],"domain_scores_gemma":[0.999732,0.00005907092,0.00005283592,0.000008149583,0.00008418393,0.00006391246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007613725,0.00008434005,0.01745554,0.0001100517,0.00002921159,0.0001285959,0.000199393,0.00007792618,0.9781361,0.0000287322,0.0000655012,0.002923159],"study_design_scores_gemma":[0.00001809861,0.00162488,0.7907737,0.0000478846,0.000201539,0.0003291595,0.001319086,0.001357219,0.201532,0.0001117465,0.002641011,0.00004358525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944102,0.00111339,0.0009703927,0.00003682933,0.00002330716,0.00002338944,0.002926605,0.00001667048,0.0004791098],"genre_scores_gemma":[0.9910529,0.0009811661,0.001274447,0.000156958,0.00002027038,0.00007805547,0.003932219,0.0000142951,0.002489581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003129466,"threshold_uncertainty_score":0.006222486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05608371643487647,"score_gpt":0.3489524103361886,"score_spread":0.2928686939013121,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}