{"id":"W2142135460","doi":"10.1128/jb.01032-12","title":"Identification of Accessory Genome Regions in Poultry Clostridium perfringens Isolates Carrying the netB Plasmid","year":2013,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Clostridium perfringens; Genetics; Locus (genetics); Multilocus sequence typing; Plasmid; Gene; Microbiology; Virulence; Pathogenicity island; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007845741,0.0002880737,0.0001957839,0.0006754082,0.0001623728,0.0002340722,0.0001131919,0.0002091861,0.0004249634],"category_scores_gemma":[0.00039262,0.000156939,0.0001790616,0.0004522005,0.0001638267,0.0001019611,0.0002495238,0.0002059399,0.000129521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001694671,"about_ca_system_score_gemma":0.0001154599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001542074,"about_ca_topic_score_gemma":0.002055062,"domain_scores_codex":[0.9998958,0.000008412095,0.000007523372,0.00003482516,0.00002732205,0.00002608249],"domain_scores_gemma":[0.9997135,0.00006261979,0.00009584488,0.00001907804,0.00003252044,0.00007643424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002910024,0.00003948461,0.02453631,0.0000468164,0.00001575986,0.000142259,0.000131079,0.00006106021,0.9724278,0.00001837762,0.00001616135,0.002273859],"study_design_scores_gemma":[0.00002151948,0.0005132731,0.9412764,0.00001258298,0.00005855111,0.001383621,0.0003408286,0.0007567403,0.05497249,0.0000460229,0.0006068724,0.0000111643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994723,0.00006236085,0.0001604624,0.000005448354,9.120897e-7,0.000005745101,0.0002053396,0.000003818604,0.00008361453],"genre_scores_gemma":[0.9972467,0.00009226664,0.001004956,0.00002263998,0.000003841343,0.00001565478,0.001335408,0.000006754007,0.0002717092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001542074,"threshold_uncertainty_score":0.003066242,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02818011807070656,"score_gpt":0.296493719448751,"score_spread":0.2683136013780444,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}