{"id":"W2142418684","doi":"10.1128/jcm.03218-13","title":"Twenty-Five-Year Outbreak of Pseudomonas aeruginosa Infecting Individuals with Cystic Fibrosis: Identification of the Prairie Epidemic Strain","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"","keywords":"Pseudomonas aeruginosa; Cystic fibrosis; Sputum; Multilocus sequence typing; Outbreak; Population; Bronchiectasis; Medicine; Microbiology; Biology; Genotype; Internal medicine; Virology; Bacteria; Lung; Pathology; Tuberculosis; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004455438,0.0001724433,0.0002005359,0.0003637069,0.00062026,0.0004069806,0.000200171,0.0003624292,0.0004232583],"category_scores_gemma":[0.001164613,0.0002010046,0.0001522659,0.0002712415,0.0002800117,0.0003256388,0.0005355398,0.0004849729,0.00008920147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000340841,"about_ca_system_score_gemma":0.0003316379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004988103,"about_ca_topic_score_gemma":0.006095632,"domain_scores_codex":[0.9996464,0.00007766447,0.00003354539,0.00008663965,0.00007390574,0.00008186419],"domain_scores_gemma":[0.999361,0.0001187626,0.000214138,0.00004482783,0.00008551525,0.0001758493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000523671,0.00004965531,0.9952421,0.000006069637,0.000009298167,0.0007499438,0.000464211,0.00002110184,0.00181834,0.000008765604,0.00005260185,0.001525562],"study_design_scores_gemma":[0.000003137674,0.0001639487,0.9969953,0.000002846121,0.000006936805,0.001884217,0.0004593273,0.0001070628,0.0002347816,0.000007393584,0.0001317171,0.000003270396],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998899,0.00002180602,0.00002030134,0.00000858231,7.235827e-7,0.000002356061,0.00001733869,7.397254e-7,0.00003822563],"genre_scores_gemma":[0.9997357,0.00003079163,0.00007719053,0.00002054988,0.000004055076,0.000003167112,0.0000789531,4.963526e-7,0.00004910699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004988103,"threshold_uncertainty_score":0.009918153,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02658169219869052,"score_gpt":0.3649681632861949,"score_spread":0.3383864710875044,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}