{"id":"W2142429167","doi":"10.1101/002428","title":"Evidence for widespread positive and negative selection in coding and conserved noncoding regions of <i>Capsella grandiflora</i>","year":2014,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Toronto","funders":"","keywords":"Biology; Negative selection; Genetics; Evolutionary biology; Selection (genetic algorithm); Computational biology; Genome; Gene; Computer science; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001359478,0.0002693761,0.00019664,0.0005466043,0.0003146578,0.0003156595,0.0002381272,0.0002279422,0.0009250949],"category_scores_gemma":[0.0001793529,0.0001583858,0.0002227243,0.0004587756,0.0002576628,0.000140619,0.0002222061,0.000296712,0.0001843089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002586996,"about_ca_system_score_gemma":0.0002001224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005215656,"about_ca_topic_score_gemma":0.009996993,"domain_scores_codex":[0.9999119,0.000007757843,0.000005787478,0.00003908771,0.00002001067,0.00001543445],"domain_scores_gemma":[0.9996694,0.00006677331,0.00009894635,0.00003230289,0.00007069367,0.00006197233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006687272,0.000005944865,0.01516294,0.00004319744,0.0000210587,0.00005583584,0.00009692989,0.00005354733,0.982556,0.00003876998,0.00004644759,0.00185252],"study_design_scores_gemma":[0.000009441193,0.0001077558,0.9383859,0.00001548949,0.00005527122,0.0004001876,0.0002852053,0.0004702963,0.05780264,0.00006923948,0.002379067,0.00001957089],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982882,0.0002604308,0.0003602518,0.00003057896,0.0000031495,0.000003826825,0.0005060909,0.00003718066,0.0005102439],"genre_scores_gemma":[0.9973986,0.00009879496,0.000638598,0.0000608791,0.000004057827,0.000009814544,0.001421504,0.00001631015,0.0003514165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005215656,"threshold_uncertainty_score":0.01037055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02687453975203303,"score_gpt":0.2485723102780086,"score_spread":0.2216977705259756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}