{"id":"W2142657063","doi":"10.1186/1471-2164-8-121","title":"Genome evolution in major Escherichia coli O157:H7 lineages","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Canadian Food Inspection Agency; Health Canada","funders":"Health Canada; Public Health Agency; Public Health Agency of Canada; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; Lineage (genetic); ORFS; Genetics; Genome; Escherichia coli; Virulence; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007127448,0.0001851945,0.0001811132,0.00009240861,0.00009517597,0.00002471013,0.0002702331,0.000180893,0.00001153224],"category_scores_gemma":[0.0002452035,0.0001954709,0.00008294685,0.0002175418,0.0001063284,0.000004211081,0.0002935707,0.000174915,0.00003719044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000168808,"about_ca_system_score_gemma":0.0002292535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008935031,"about_ca_topic_score_gemma":0.002744978,"domain_scores_codex":[0.99856,0.00006384801,0.0003033321,0.0003894763,0.0001485418,0.0005348271],"domain_scores_gemma":[0.9993158,0.00003378605,0.00007702009,0.0003626925,0.00009651071,0.0001141766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001755618,0.00007596466,0.0290323,0.00002977213,0.00003051721,0.000005839206,0.00007110179,0.0002158206,0.9700583,0.0001071177,0.00008966227,0.0001080897],"study_design_scores_gemma":[0.00150114,0.0003134491,0.844078,0.00001025177,0.00001864942,0.000005779687,0.0006398041,0.0002495519,0.1046841,0.0001659477,0.04782788,0.0005054591],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861862,0.002646856,0.008549793,0.00005634052,0.0001241877,0.0003499693,0.0000137819,0.00001797649,0.002054894],"genre_scores_gemma":[0.9881058,0.0003491027,0.00960977,0.0001192218,0.0004505338,0.00003098474,0.00005021235,0.0000363716,0.001248038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8653742,"threshold_uncertainty_score":0.797107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01602754124643413,"score_gpt":0.2746307409765067,"score_spread":0.2586031997300726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}