{"id":"W2142657063","doi":"10.1186/1471-2164-8-121","title":"Genome evolution in major Escherichia coli O157:H7 lineages","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Canadian Food Inspection Agency; Health Canada","funders":"Health Canada; Public Health Agency; Public Health Agency of Canada; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; Lineage (genetic); ORFS; Genetics; Genome; Escherichia coli; Virulence; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002669636,0.0002315815,0.0002555141,0.000702152,0.0003127577,0.0005542635,0.0002681871,0.0005443121,0.0005829889],"category_scores_gemma":[0.0005838121,0.0002035903,0.0002328837,0.0005056968,0.0002029889,0.0002216375,0.0004326305,0.0003541395,0.0002691195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003981445,"about_ca_system_score_gemma":0.0002232635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00109157,"about_ca_topic_score_gemma":0.001345721,"domain_scores_codex":[0.9997533,0.00003594947,0.00001295196,0.00009176227,0.00003898707,0.00006700334],"domain_scores_gemma":[0.9994901,0.00008981304,0.0001473123,0.00002593754,0.0001401755,0.0001067431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000946965,0.0001008736,0.2503836,0.0001202994,0.00008154956,0.0001977525,0.0009187876,0.0004600043,0.7316459,0.0004314412,0.0001910574,0.01452181],"study_design_scores_gemma":[0.00002006929,0.0003604428,0.979005,0.00002582877,0.00005051769,0.0004193209,0.0006899773,0.001267542,0.01562093,0.0002341707,0.002289621,0.0000165988],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989786,0.0002489761,0.0002755415,0.00001659267,0.000001604515,0.000007585862,0.0001590878,0.000006150288,0.0003059429],"genre_scores_gemma":[0.9962189,0.0003226413,0.001549573,0.00008261023,0.000005144619,0.00002580245,0.00134248,0.00001256219,0.0004405034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00109157,"threshold_uncertainty_score":0.002888739,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01602754124643413,"score_gpt":0.2746307409765067,"score_spread":0.2586031997300726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}