{"id":"W2142755679","doi":"10.1128/jcm.02031-07","title":"Sequence Polymorphisms in a Surface PPE Protein Distinguish Types I, II, and III of <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Crohn's and Colitis Foundation of Canada; Faculty of Veterinary Medicine, University of Calgary; Crohn's and Colitis Foundation","keywords":"Paratuberculosis; Biology; Locus (genetics); Typing; Mycobacterium; Genetics; Gene; Microbiology; Nucleic acid sequence; Single-nucleotide polymorphism; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001452494,0.0002567446,0.0001753348,0.0003936155,0.000101395,0.0002588049,0.0001506712,0.0004003228,0.0006742679],"category_scores_gemma":[0.000402191,0.0001247328,0.0002704299,0.0002358912,0.0001965163,0.000186421,0.0001982428,0.0002866985,0.0004775533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000699301,"about_ca_system_score_gemma":0.00006499451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003764277,"about_ca_topic_score_gemma":0.0003847514,"domain_scores_codex":[0.999879,0.00001702054,0.00001593336,0.00003754927,0.00002831258,0.00002210136],"domain_scores_gemma":[0.9997101,0.00007554473,0.0001053963,0.00002345629,0.00004652826,0.00003904622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001141438,0.00003967126,0.02751951,0.00004615339,0.00001267035,0.0002090301,0.0001009683,0.00004932213,0.9679072,0.00003922523,0.00005073872,0.003911405],"study_design_scores_gemma":[0.00001934997,0.0007478727,0.600386,0.00003488523,0.00007845494,0.006194063,0.0004697866,0.001011027,0.3873633,0.0002725458,0.003405218,0.00001739777],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960701,0.0004981321,0.00261736,0.00004231339,0.000007731142,0.00001209514,0.000228811,0.00001899324,0.0005043903],"genre_scores_gemma":[0.9951664,0.0001631487,0.003557036,0.00004779101,0.00000708999,0.000009936634,0.0006713175,0.000009178831,0.0003681004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006742679,"threshold_uncertainty_score":0.002255678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0599509477736142,"score_gpt":0.3562958641112376,"score_spread":0.2963449163376234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}