{"id":"W2142855333","doi":"10.1128/iai.73.4.2061-2074.2005","title":"Redundant Roles for Met Docking Site Tyrosines and the Gab1 Pleckstrin Homology Domain in InlB-Mediated Entry of <i>Listeria monocytogenes</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Liver physiology and pathology","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Pleckstrin homology domain; Biology; Listeria monocytogenes; Homology modeling; Docking (animal); Computational biology; Cell biology; Sequence homology; Plasma protein binding; Microbiology; Peptide sequence; Biochemistry; Genetics; Signal transduction; Bacteria; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004167207,0.00008828242,0.0002773445,0.0000899216,0.0001050762,0.000005431982,0.00002716242,0.0001196232,0.0000143479],"category_scores_gemma":[0.0001060271,0.00006183013,0.00003801663,0.00009711177,0.0003360262,0.00005610099,0.00005296314,0.0001621576,0.0000013771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000143143,"about_ca_system_score_gemma":0.00002249876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004702289,"about_ca_topic_score_gemma":0.0003764679,"domain_scores_codex":[0.9992492,0.0002802511,0.0002145127,0.0001097602,0.00002697948,0.0001192818],"domain_scores_gemma":[0.9994239,0.0002857572,0.00009098058,0.000129446,0.0000445984,0.0000253601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.008157386,0.000422475,0.5432085,0.0002382882,0.0001588261,0.000006996493,0.006560827,0.00004302365,0.4283901,0.002370925,0.0001695671,0.01027317],"study_design_scores_gemma":[0.01161753,0.0006704179,0.9469648,0.00007412506,0.0001044443,0.0003577126,0.0003134028,0.0002800431,0.03186037,0.001946967,0.005676142,0.0001340695],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979161,0.000916061,0.00009208587,0.000444053,0.00009656374,0.0002859822,0.00001468207,0.00001487102,0.0002196177],"genre_scores_gemma":[0.9984425,0.0007995316,0.0001475829,0.0004384756,0.00006440618,0.000027528,0.00004618022,0.000005468045,0.00002833616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4037563,"threshold_uncertainty_score":0.252136,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01684634036457405,"score_gpt":0.2774208207731337,"score_spread":0.2605744804085596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}