{"id":"W2142897695","doi":"10.1128/ec.4.12.2029-2043.2005","title":"Serial Analysis of Gene Expression Reveals Conserved Links between Protein Kinase A, Ribosome Biogenesis, and Phosphate Metabolism in <i>Ustilago maydis</i>","year":2005,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Ustilago; Biology; Mutant; Gene; Cell biology; Wild type; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003837995,0.0002179514,0.0004437753,0.0002142025,0.00005013994,0.00002309719,0.0002410113,0.0003055399,0.00007546897],"category_scores_gemma":[0.00004449157,0.0002012227,0.000145754,0.0004570138,0.0001125383,0.00000650042,0.0002104794,0.0001630196,0.000007712178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000123933,"about_ca_system_score_gemma":0.00007186898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009637514,"about_ca_topic_score_gemma":0.00005680989,"domain_scores_codex":[0.9982668,0.0001722324,0.0004546822,0.0004954468,0.0002433249,0.0003675576],"domain_scores_gemma":[0.9991363,0.00002599629,0.0001347735,0.0004279008,0.00009390875,0.000181158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000171229,0.0001213231,0.06049975,0.00005882908,0.0001054018,0.000005484651,0.00004427605,0.0003893206,0.9377564,0.000003965409,0.00009497011,0.0007490876],"study_design_scores_gemma":[0.000923797,0.00009403048,0.131322,0.00002032043,0.0001806068,6.552536e-7,0.00001926276,0.0001508948,0.8666252,0.00002149011,0.0004490454,0.000192708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928901,0.005997741,0.0001641076,0.0001074248,0.00004220984,0.000385838,0.0002204183,0.000006957989,0.000185272],"genre_scores_gemma":[0.9951364,0.0004226417,0.003008598,0.00006594682,0.0002522599,0.00002143194,0.0003429026,0.00002472305,0.0007251079],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07113115,"threshold_uncertainty_score":0.8205625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01204001442940127,"score_gpt":0.2473024487204871,"score_spread":0.2352624342910858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}