{"id":"W2143124024","doi":"10.1093/bioinformatics/btn416","title":"ZOOM! Zillions of oligos mapped","year":2008,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":211,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; Western University","funders":"National Human Genome Research Institute","keywords":"Zoom; Computer science; Reference genome; Human genome; Software; Sequence assembly; Computational biology; Genome; DNA sequencing; Biology; Genetics; Gene; Operating system; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007714579,0.001325344,0.0006986557,0.001883593,0.0009343659,0.001181028,0.001315744,0.0009315193,0.08947511],"category_scores_gemma":[0.004038141,0.0007330959,0.0007781969,0.001392005,0.0005272278,0.00168466,0.00219238,0.001505326,0.01758869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006710933,"about_ca_system_score_gemma":0.0006790108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002799532,"about_ca_topic_score_gemma":0.00419612,"domain_scores_codex":[0.9996403,0.00004890738,0.00002557865,0.00008744823,0.0001439929,0.00005366428],"domain_scores_gemma":[0.9984851,0.0005791261,0.00008359856,0.0003901424,0.0002943228,0.0001676462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001727863,0.000179125,0.003737596,0.001350324,0.0001738116,0.001381166,0.0007456563,0.007463756,0.1980521,0.01056185,0.287815,0.4868118],"study_design_scores_gemma":[0.0004594099,0.0003796298,0.01203388,0.0004734582,0.000155382,0.001537442,0.0004866424,0.09928761,0.3444174,0.02773366,0.5126563,0.0003791956],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.05631614,0.002379545,0.5736812,0.003621862,0.003185958,0.0007715317,0.02655193,0.2666486,0.06684335],"genre_scores_gemma":[0.1653832,0.001548762,0.7344662,0.002280238,0.0003675356,0.001058377,0.0162384,0.03108042,0.04757692],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.08947511,"threshold_uncertainty_score":0.299324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01669673998516637,"score_gpt":0.2223268851516874,"score_spread":0.205630145166521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}