{"id":"W2143124024","doi":"10.1093/bioinformatics/btn416","title":"ZOOM! Zillions of oligos mapped","year":2008,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":211,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; Western University","funders":"National Human Genome Research Institute","keywords":"Zoom; Computer science; Reference genome; Human genome; Software; Sequence assembly; Computational biology; Genome; DNA sequencing; Biology; Genetics; Gene; Operating system; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004851145,0.00008899785,0.0001143906,0.00003074008,0.00007278309,0.000002880812,0.0001197484,0.00006435472,0.000006319687],"category_scores_gemma":[0.00002763659,0.00007900243,0.00006958096,0.00005887849,0.0000970716,6.074781e-7,0.00009183719,0.00002713913,0.00001846572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003257301,"about_ca_system_score_gemma":0.0000453254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005443057,"about_ca_topic_score_gemma":0.000002767333,"domain_scores_codex":[0.9994702,0.000006312406,0.0002409469,0.00006718408,0.00007836233,0.000137038],"domain_scores_gemma":[0.9995613,0.000005850286,0.00008927804,0.0002362735,0.00006538839,0.00004192305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000940063,0.0002341433,0.03100802,0.0002273251,0.000432165,0.000004748671,0.003180804,0.0004344452,0.9055952,0.001426255,0.04822744,0.009135494],"study_design_scores_gemma":[0.001626909,0.0008557879,0.04840548,0.00002762919,0.00005761478,0.0001499109,0.00102882,0.001472065,0.5165744,0.0002237919,0.4288483,0.0007292491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824517,0.0004386542,0.001948513,0.00004231856,0.0001654124,0.0001217991,0.00004454808,0.000003809728,0.01478323],"genre_scores_gemma":[0.9869395,0.0009788556,0.01132026,0.0001227329,0.00006640693,0.00000578071,0.00002630283,0.000008101834,0.0005320539],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3890207,"threshold_uncertainty_score":0.3221625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01669673998516637,"score_gpt":0.2223268851516874,"score_spread":0.205630145166521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}