{"id":"W2143225304","doi":"10.3201/eid1805.110235","title":"Epidemic of Invasive Pneumococcal Disease, Western Canada, 2005–2009","year":2012,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; Saskatchewan Disease Control Laboratory; University of Alberta; Dalhousie University; Provincial Laboratory of Public Health","funders":"Imperial College London; University of Alberta; Wellcome Trust","keywords":"Serotype; Multilocus sequence typing; Outbreak; Pneumococcal disease; Typing; Pneumococcal infections; Disease surveillance; Medicine; Virology; Disease; Molecular epidemiology; Genotype; Biology; Streptococcus pneumoniae; Microbiology; Internal medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001090749,0.0002423102,0.0004067728,0.0001926756,0.000184917,0.000008962519,0.00007857076,0.00006133458,0.0002754021],"category_scores_gemma":[0.0005211061,0.0002171328,0.0002111656,0.0002728504,0.0001096517,0.0001891069,0.00005127774,0.0001920217,0.00004274155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002383776,"about_ca_system_score_gemma":0.001199899,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01842324,"about_ca_topic_score_gemma":0.0408464,"domain_scores_codex":[0.9983474,0.0001031862,0.0004046305,0.0002311331,0.0003290223,0.000584626],"domain_scores_gemma":[0.9981394,0.0001885764,0.0001742713,0.0003732673,0.0001202743,0.001004173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002311988,0.0004602089,0.9895399,0.0002108329,0.0001390127,0.00003098401,0.0000507833,0.0001510722,0.003748861,0.00006448655,0.005254968,0.0003258054],"study_design_scores_gemma":[0.0005853756,0.00007127589,0.964654,0.0001587702,0.0004438083,0.00004729304,0.0000447455,0.00001676845,0.0003699239,0.0000381886,0.03334686,0.0002229399],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993999,0.001882335,0.00005925355,0.0009500043,0.0009256217,0.000358932,0.0001492967,0.0001643743,0.001511185],"genre_scores_gemma":[0.9972894,0.0001460176,0.000002166434,0.001280887,0.0006081602,0.00006404724,0.00004292238,0.00003797999,0.0005283973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02809189,"threshold_uncertainty_score":0.9881132,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01212911124715534,"score_gpt":0.2678431188474944,"score_spread":0.2557140076003391,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}