{"id":"W2143361590","doi":"10.1101/gr.4746406","title":"The fate of laterally transferred genes: Life in the fast lane to adaptation or death","year":2006,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":181,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Gene; Genome evolution; Genetics; Phylogenetic tree; Bacterial genome size; Lineage (genetic); Horizontal gene transfer; Phylogenetics; Adaptation (eye); Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008708508,0.00008001518,0.00009488744,0.00005125593,0.0001587433,0.00003303267,0.0003538063,0.00004886508,0.000005951095],"category_scores_gemma":[0.00004420313,0.00004433859,0.00003849199,0.0001872908,0.00006892186,3.763456e-7,0.00007725036,0.00008136802,0.000006329903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001029721,"about_ca_system_score_gemma":0.0001057165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006135004,"about_ca_topic_score_gemma":0.002643565,"domain_scores_codex":[0.9988914,0.0001835133,0.000200986,0.0001879318,0.0002257465,0.0003104929],"domain_scores_gemma":[0.9994769,0.00006726189,0.00001878194,0.000276506,0.0001252645,0.00003528817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003965658,0.0000658124,0.003808395,0.00002281224,0.00004480095,0.000005432075,0.001248492,0.002235121,0.9855742,0.0004337393,0.0003025567,0.005862016],"study_design_scores_gemma":[0.001768794,0.002205326,0.6492192,0.00002352368,0.00002100002,0.00001703998,0.005467996,0.0002792281,0.0432379,0.00154859,0.2957644,0.000447046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944905,0.002779197,0.0002554249,0.0009449779,0.00002587293,0.0003837527,0.00004128989,7.815668e-7,0.001078192],"genre_scores_gemma":[0.9976849,0.001153019,0.0002312905,0.00006244003,0.0001403053,0.00006905237,0.00002549938,0.00001053577,0.0006229368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9423364,"threshold_uncertainty_score":0.1808075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07300123782397791,"score_gpt":0.328790605219127,"score_spread":0.2557893673951491,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}