{"id":"W2143396255","doi":"10.1099/mic.0.022988-0","title":"A novel PhoP-regulated locus encoding the cytolysin ClyA and the secreted invasin TaiA of Salmonella enterica serovar Typhi is involved in virulence","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"McMaster University","keywords":"Salmonella typhi; Operon; Microbiology; Biology; Salmonella enterica; Virulence; Cytolysin; Secretion; Pathogenicity island; Phagocytosis; Escherichia coli; Lytic cycle; Gene; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001011501,0.0004852034,0.0003085786,0.0002491389,0.0001111185,0.0002250935,0.0001560117,0.0002721193,0.0006283679],"category_scores_gemma":[0.0001704172,0.000152689,0.0004335069,0.0001515951,0.0002736904,0.0001622538,0.0003984081,0.0004688319,0.0004033006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001963906,"about_ca_system_score_gemma":0.0002136931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002209012,"about_ca_topic_score_gemma":0.000156928,"domain_scores_codex":[0.999921,0.00001008328,0.00000767946,0.00002270244,0.00001984828,0.00001872288],"domain_scores_gemma":[0.9997576,0.00005150916,0.00008556354,0.0000215082,0.00002642432,0.00005731036],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005555058,0.00001166617,0.0003703603,0.00001502333,0.00000191054,0.0001041403,0.000009572132,0.00002650022,0.9989375,0.00003094198,0.000007027373,0.0004297753],"study_design_scores_gemma":[0.00007243553,0.000746592,0.07436122,0.00002060353,0.00004603181,0.003465295,0.0001632184,0.003338789,0.9153219,0.0002362277,0.002203144,0.00002441723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957599,0.0002706766,0.00328567,0.00004018114,0.00001154017,0.00002291523,0.0003295361,0.00004923547,0.000230296],"genre_scores_gemma":[0.9940962,0.000161612,0.003262922,0.00003679348,0.00001238627,0.0000365269,0.001126459,0.00002615104,0.001240931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006283679,"threshold_uncertainty_score":0.002102137,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01791640372113552,"score_gpt":0.2120989081458997,"score_spread":0.1941825044247642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}