{"id":"W2143494126","doi":"10.1097/olq.0b013e3181a4c3fc","title":"Validation of the APTIMA Combo 2 Assay for the Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in SurePath Liquid-Based Pap Test Samples Taken With Different Collection Devices","year":2009,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Medicine; Virology; Gynecology; Neisseria; Microbiology; Bacteria; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030229,0.0001769914,0.0002734887,0.0001572989,0.000244222,0.00002062556,0.0001557842,0.0001088889,0.00002538565],"category_scores_gemma":[0.0003964069,0.0001029876,0.00007961196,0.000454719,0.0002336032,0.0001187158,0.000007360952,0.0001690975,4.286617e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004298727,"about_ca_system_score_gemma":0.0001290172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003289958,"about_ca_topic_score_gemma":0.0007637089,"domain_scores_codex":[0.9987199,0.0003837144,0.0003421571,0.0002949929,0.00005500677,0.000204181],"domain_scores_gemma":[0.9976643,0.001608359,0.0001873812,0.0003153356,0.0002067946,0.00001781435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002622863,0.001541889,0.2620873,0.0001792928,0.0002019187,1.442121e-7,0.0005218135,0.0009397505,0.7138207,0.00005661321,0.00001150949,0.01801617],"study_design_scores_gemma":[0.001395194,0.001018085,0.7784772,0.00005176598,0.0001565454,0.000004754686,0.0002321076,0.0002178616,0.2182166,0.00006795177,0.00006716276,0.0000947369],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990003,0.001632281,0.006380287,0.0003153593,0.00008871089,0.001354437,0.0001752126,0.00003470675,0.00001595119],"genre_scores_gemma":[0.9996053,0.0000487453,0.00002920604,0.00002428786,0.00001221381,0.0001598937,0.00007549911,0.00001401169,0.00003083953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5163898,"threshold_uncertainty_score":0.4199713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01420360967624202,"score_gpt":0.2553900742301833,"score_spread":0.2411864645539413,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}