{"id":"W2143564454","doi":"10.18632/oncotarget.4405","title":"Whole-transcriptome analysis links trastuzumab sensitivity of breast tumors to both HER2 dependence and immune cell infiltration","year":2015,"lang":"en","type":"article","venue":"Oncotarget","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"BC Cancer Agency; Fondazione Pezcoller; Associazione Italiana per la Ricerca sul Cancro; Cancer Research UK","keywords":"Trastuzumab; Medicine; Breast cancer; Oncology; Internal medicine; Metastatic breast cancer; Cancer","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001440933,0.0001859542,0.000604284,0.000346457,0.00004639901,0.00003085412,0.00009984221,0.0001657241,0.00009256172],"category_scores_gemma":[0.0001287723,0.0001739002,0.0001290307,0.001028516,0.0001120289,0.0001454783,0.0000498387,0.0004669001,0.00004027583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002355302,"about_ca_system_score_gemma":0.0005037024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00285984,"about_ca_topic_score_gemma":0.0007010034,"domain_scores_codex":[0.9978225,0.0002130478,0.000407753,0.0003894335,0.0008053158,0.0003619951],"domain_scores_gemma":[0.998533,0.00008840342,0.00009398131,0.000442685,0.0003329836,0.0005090073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006548265,0.0004224007,0.3146396,0.0002687832,0.0002865929,0.0001900218,0.003291637,0.0006383693,0.6758571,0.00002602657,0.001508715,0.002215945],"study_design_scores_gemma":[0.002147828,0.001137833,0.9308155,0.0001886009,0.0005290307,0.0001959576,0.001137082,0.004706516,0.05595725,0.00006290913,0.002771869,0.000349652],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909442,0.0003765738,0.003826492,0.001818123,0.00007765542,0.0004277543,0.0001298355,0.00004198441,0.002357374],"genre_scores_gemma":[0.9966184,0.00002262398,0.002173117,0.0002175363,0.000106536,0.00001605881,0.00006626851,0.00002609623,0.0007533821],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6198998,"threshold_uncertainty_score":0.7091445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02595780682352485,"score_gpt":0.3178625897263141,"score_spread":0.2919047829027893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}