{"id":"W2143709116","doi":"10.1128/jcm.02153-08","title":"A Common Variant of Staphylococcal Cassette Chromosome <i>mec</i> Type IVa in Isolates from Copenhagen, Denmark, Is Not Detected by the BD GeneOhm Methicillin-Resistant <i>Staphylococcus aureus</i> Assay","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Becton Dickinson (Canada)","funders":"","keywords":"Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Staphylococcal infections; SCCmec; Medicine; Biology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005529181,0.000506654,0.0006144965,0.000779193,0.0004092236,0.00139506,0.0004431173,0.0005828014,0.0004837319],"category_scores_gemma":[0.001631342,0.0007021182,0.0004860244,0.000671361,0.0004681703,0.0002296267,0.0004066963,0.0004019226,0.000293212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005126729,"about_ca_system_score_gemma":0.000652717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01705637,"about_ca_topic_score_gemma":0.01985732,"domain_scores_codex":[0.9980308,0.000149236,0.0003379656,0.0006148677,0.0006690369,0.0001980684],"domain_scores_gemma":[0.9987271,0.0002958512,0.0004619599,0.0001047378,0.0002425774,0.0001677484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007913361,0.000122368,0.4934989,0.0002088523,0.0001408865,0.001383371,0.000844738,0.0003552695,0.4968606,0.0001533427,0.0003235295,0.005316903],"study_design_scores_gemma":[0.00004013546,0.0006839991,0.9059188,0.00006712361,0.0002132165,0.006079169,0.001086938,0.0007662187,0.0821202,0.00004517469,0.002933979,0.00004495473],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978923,0.0004172768,0.0005118522,0.00001807558,0.00001560153,0.00001631548,0.0005470281,0.000008983992,0.0005726353],"genre_scores_gemma":[0.997398,0.0001769263,0.00082573,0.00003424546,0.000004181861,0.00000906545,0.001255728,0.00001149188,0.0002846079],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01705637,"threshold_uncertainty_score":0.03391421,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03531464013109602,"score_gpt":0.3417700621961726,"score_spread":0.3064554220650766,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}