{"id":"W2143709116","doi":"10.1128/jcm.02153-08","title":"A Common Variant of Staphylococcal Cassette Chromosome <i>mec</i> Type IVa in Isolates from Copenhagen, Denmark, Is Not Detected by the BD GeneOhm Methicillin-Resistant <i>Staphylococcus aureus</i> Assay","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Becton Dickinson (Canada)","funders":"","keywords":"Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Staphylococcal infections; SCCmec; Medicine; Biology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.004408232,0.0006335422,0.003064699,0.0002762721,0.000128614,0.00004742655,0.001117521,0.001192336,0.0007706889],"category_scores_gemma":[0.002684912,0.0004283286,0.001007731,0.0008778679,0.000903435,0.0001370796,0.0001720974,0.003009925,0.0001000261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001907252,"about_ca_system_score_gemma":0.0009168345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002191094,"about_ca_topic_score_gemma":0.0003023215,"domain_scores_codex":[0.9910478,0.00194399,0.005051833,0.0007361005,0.0003343444,0.000885943],"domain_scores_gemma":[0.9894395,0.005003139,0.003027716,0.00100805,0.001125311,0.0003962254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.009037086,0.0009831749,0.003122209,0.00004260645,0.0005970931,0.0004818766,0.0002025623,0.00001493219,0.9141917,0.00002136833,0.06883068,0.002474782],"study_design_scores_gemma":[0.01548463,0.009686183,0.04900801,0.001350611,0.001446866,0.0004024194,0.0002732492,0.0001560381,0.7473772,0.0007349092,0.1729145,0.001165337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9826154,0.005981408,0.0005431523,0.008168353,0.0009030938,0.0007973765,0.000717682,0.00002152498,0.0002520451],"genre_scores_gemma":[0.982893,0.001260125,0.002607144,0.01234013,0.0005386086,0.000004164608,0.00005526629,0.00006243068,0.0002390709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1668144,"threshold_uncertainty_score":0.9998168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03531464013109602,"score_gpt":0.3417700621961726,"score_spread":0.3064554220650766,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}