{"id":"W2143718468","doi":"10.1128/jb.00827-08","title":"Frequent Homologous Recombination Events in <i>Mycobacterium tuberculosis</i> PE/PPE Multigene Families: Potential Role in Antigenic Variability","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"National Institute of Allergy and Infectious Diseases; World Health Organization","keywords":"Biology; Homologous recombination; Genetics; Gene; Mycobacterium tuberculosis; Homologous chromosome; Antigenic variation; Non-allelic homologous recombination; Recombination; Intergenic region; Virulence; Genome; Genetic recombination; Tuberculosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002501341,0.0002549021,0.001190998,0.0007663557,0.00006449979,0.000004047501,0.0002492917,0.0004508509,0.0001972617],"category_scores_gemma":[0.001735385,0.0002136058,0.0003027324,0.0003668913,0.0002126533,0.0002320009,0.00009973622,0.001057945,0.00002998301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000575447,"about_ca_system_score_gemma":0.0004312653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007453403,"about_ca_topic_score_gemma":0.0001974041,"domain_scores_codex":[0.9955457,0.001518925,0.001576085,0.0003864484,0.0002654187,0.0007074246],"domain_scores_gemma":[0.9982748,0.0003562996,0.0004504026,0.0003383381,0.0003060965,0.000274049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001266268,0.0009259621,0.746821,0.0000494293,0.0001133887,0.0006840868,0.0003449126,0.0001103037,0.2473902,0.00001155043,0.0001403823,0.002142542],"study_design_scores_gemma":[0.003668964,0.001461368,0.9867473,0.0000863682,0.00003380244,0.004926205,0.0001053831,0.0004139303,0.001308076,0.0005810579,0.000508102,0.0001594951],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957655,0.000464759,0.00008936393,0.002358507,0.0007465935,0.0003700003,0.000009931176,0.00001357781,0.000181766],"genre_scores_gemma":[0.9930111,0.005243103,0.000801052,0.0005826522,0.0002465906,0.00001628128,0.00004148481,0.00002299173,0.00003474303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2460821,"threshold_uncertainty_score":0.8710592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0160020702157658,"score_gpt":0.2842056305689604,"score_spread":0.2682035603531946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}