{"id":"W2143846122","doi":"10.1186/1471-2164-12-161","title":"Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Trent University; Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; Broad Institute; Biotechnology and Biological Sciences Research Council; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Urediniospore; Haustorium; Puccinia; Expressed sequence tag; Rust (programming language); Botany; Spore; DNA sequencing; Gene; Obligate parasite; Fungus; Sequence assembly; Genome; Host (biology); Genetics; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002471955,0.0002189676,0.0002966523,0.000017907,0.0001839304,0.0001229087,0.000258851,0.0001349914,0.0001090368],"category_scores_gemma":[0.00001712924,0.00009073462,0.00003168949,0.0001227502,0.000168461,0.00007578335,0.000144826,0.0001279315,0.00001446003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002299528,"about_ca_system_score_gemma":0.00002594861,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01010903,"about_ca_topic_score_gemma":0.04808874,"domain_scores_codex":[0.9987184,0.00008778126,0.00028336,0.0004526882,0.0001086719,0.0003490506],"domain_scores_gemma":[0.9994589,0.0001952304,0.00006538447,0.0001173981,0.00002565403,0.0001374366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006201137,0.0001434662,0.5697597,0.00001196712,0.00002299764,0.00004358737,0.00298618,0.00001157848,0.4080164,0.0002602093,0.0006542038,0.01746962],"study_design_scores_gemma":[0.0004728162,0.0005877915,0.9803473,0.00001500761,0.00003721716,0.00002825145,0.004173981,0.00003576844,0.006858889,0.000489021,0.006598251,0.0003556633],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961065,0.002355145,0.000008427854,0.0002161895,0.0002858664,0.0003089158,0.0004957134,0.00001615367,0.0002070989],"genre_scores_gemma":[0.9977415,0.0001676925,0.0007396818,0.0003713406,0.0006409152,0.00001317605,0.00009669588,0.000003671314,0.0002253119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4105876,"threshold_uncertainty_score":0.9964827,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05372591772706974,"score_gpt":0.2276407390235241,"score_spread":0.1739148212964544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}