{"id":"W2143846122","doi":"10.1186/1471-2164-12-161","title":"Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Trent University; Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; Broad Institute; Biotechnology and Biological Sciences Research Council; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Urediniospore; Haustorium; Puccinia; Expressed sequence tag; Rust (programming language); Botany; Spore; DNA sequencing; Gene; Obligate parasite; Fungus; Sequence assembly; Genome; Host (biology); Genetics; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000320712,0.0003896512,0.0002695979,0.000444861,0.0003166273,0.0004906111,0.0001352724,0.0004157959,0.0008839163],"category_scores_gemma":[0.0005961228,0.000144878,0.0006255693,0.0007337735,0.0001964773,0.0002115331,0.0002804785,0.0006399793,0.0005795498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002587358,"about_ca_system_score_gemma":0.000339154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004840371,"about_ca_topic_score_gemma":0.000956431,"domain_scores_codex":[0.9997862,0.00001751471,0.00002684789,0.00008646339,0.0000524332,0.00003057795],"domain_scores_gemma":[0.9995516,0.0001727851,0.00009567001,0.00002525758,0.00009472131,0.00005996356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003787764,0.00007056777,0.007980662,0.0002035229,0.00002887136,0.000414596,0.0001897232,0.0003700281,0.9819404,0.000108678,0.0002068537,0.008107202],"study_design_scores_gemma":[0.0001235645,0.0009990369,0.2550547,0.000109899,0.0004818298,0.002933034,0.000405495,0.007890107,0.7183939,0.0003268852,0.01325017,0.00003144809],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871034,0.0004891994,0.005670433,0.0000672789,0.00002559676,0.00004263566,0.00541902,0.00008931071,0.001093164],"genre_scores_gemma":[0.9393291,0.0005447174,0.01855416,0.0002091377,0.00002803972,0.0001309522,0.03870875,0.0001014817,0.002393735],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008839163,"threshold_uncertainty_score":0.002956986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05372591772706974,"score_gpt":0.2276407390235241,"score_spread":0.1739148212964544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}